(Q37629619)

21 August 2017

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title

Life without RNAi: noncoding RNAs and their functions in Saccharomyces cerevisiae (English)

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21 August 2017

main subject

Saccharomyces cerevisiae

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Benjamin R Harrison

1

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21 August 2017

Oya Yazgan

series ordinal

2

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21 August 2017

Jocelyn E Krebs

series ordinal

3

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21 August 2017

language of work or name

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1 October 2009

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Biochemistry and Cell Biology

21 August 2017

published in

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21 August 2017

volume

87

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21 August 2017

issue

5

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21 August 2017

page(s)

767-779

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Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

21 August 2017

cites work

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21 January 2018

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A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

21 January 2018

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Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts.

21 January 2018

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Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae

21 January 2018

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Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism

21 January 2018

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RNA turnover and chromatin-dependent gene silencing

21 January 2018

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Transcription and RNAi in heterochromatic gene silencing

21 January 2018

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Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing.

21 January 2018

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TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway

21 January 2018

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Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae.

21 January 2018

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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

21 January 2018

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Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

21 January 2018

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Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes

21 January 2018

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Yeast Pol II start-site selection: the long and the short of it.

21 January 2018

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

21 January 2018

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A high-resolution map of transcription in the yeast genome

21 January 2018

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Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae

21 January 2018

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Differentiating protein-coding and noncoding RNA: challenges and ambiguities

21 January 2018

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RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing

21 January 2018

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Evidence that the localization of the elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae

21 January 2018

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Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome

21 January 2018

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Protein modifications in transcription elongation

21 January 2018

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Small silencing RNAs: an expanding universe

21 January 2018

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Non-coding-RNA regulators of RNA polymerase II transcription

21 January 2018

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Transcription and RNA interference in the formation of heterochromatin.

21 January 2018

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The antisense transcriptomes of human cells

21 January 2018

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Quality control of mRNA 3'-end processing is linked to the nuclear exosome

21 January 2018

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Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs

21 January 2018

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Antisense transcription controls cell fate in Saccharomyces cerevisiae

21 January 2018

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Heterochromatin assembly: a new twist on an old model

21 January 2018

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Yeast Trf5p is a nuclear poly(A) polymerase

21 January 2018

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The nuclear RNA surveillance machinery: the link between ncRNAs and genome structure in budding yeast?

21 January 2018

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Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control

21 January 2018

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A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster

21 January 2018

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An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II.

21 January 2018

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Transcript mapping with high-density oligonucleotide tiling arrays.

21 January 2018

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RNA-directed DNA methylation mediated by DRD1 and Pol IVb: a versatile pathway for transcriptional gene silencing in plants

21 January 2018

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The Rtt106 histone chaperone is functionally linked to transcription elongation and is involved in the regulation of spurious transcription from cryptic promoters in yeast

21 January 2018

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Argonaute slicing is required for heterochromatic silencing and spreading

21 January 2018

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Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast

21 January 2018

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Transcriptional cosuppression of yeast Ty1 retrotransposons

21 January 2018

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Transcription elongation factors repress transcription initiation from cryptic sites.

21 January 2018

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RNA Polymerase II Is Required for RNAi-Dependent Heterochromatin Assembly

21 January 2018

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Genome-wide RNA polymerase II: not genes only!

21 January 2018

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Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation.

21 January 2018

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Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways

21 January 2018

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Happy together: the life and times of Ty retrotransposons and their hosts

21 January 2018

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The role of chromatin during transcription

21 January 2018

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Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription

21 January 2018

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Overlapping pathways dictate termination of RNA polymerase II transcription.

21 January 2018

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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

21 January 2018

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Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

21 January 2018

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The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo

21 January 2018

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RNAi-mediated pathways in the nucleus

21 January 2018

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Long non-coding RNAs: insights into functions

21 January 2018

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A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts

21 January 2018

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Studies on the mechanism of RNAi-dependent heterochromatin assembly

21 January 2018

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Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

21 January 2018

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siRNA-dependent and -independent post-transcriptional cosuppression of the LTR-retrotransposon MAGGY in the phytopathogenic fungus Magnaporthe oryzae

21 January 2018

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

21 January 2018

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Genetic regulation mediated by thiamin pyrophosphate-binding motif in Saccharomyces cerevisiae

21 January 2018

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Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function

21 January 2018

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RNA exosome depletion reveals transcription upstream of active human promoters

21 January 2018

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Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

21 January 2018

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Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway

21 January 2018

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Breaking barriers to transcription elongation

21 January 2018

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The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities.

21 January 2018

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Divergent transcription from active promoters

21 January 2018

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Origins and evolution of eukaryotic RNA interference

21 January 2018

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Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions

21 January 2018

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Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription

21 January 2018

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cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II

21 January 2018

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Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

21 January 2018

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Transcriptional noise and the fidelity of initiation by RNA polymerase II.

21 January 2018

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Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

21 January 2018

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Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae

21 January 2018

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Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae

21 January 2018

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A role for noncoding transcription in activation of the yeast PHO5 gene

21 January 2018

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Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

21 January 2018

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The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

21 January 2018

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Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin

21 January 2018

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The yeast phosphatase system

21 January 2018

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

21 January 2018

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Prediction of structural noncoding RNAs with RNAz

21 January 2018

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Chromatin remodelling at promoters suppresses antisense transcription

21 January 2018

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Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes

21 January 2018

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

21 January 2018

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Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

21 January 2018

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Bidirectional promoters generate pervasive transcription in yeast

21 January 2018

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Noncoding but nonexpendable: transcriptional regulation by large noncoding RNA in eukaryotes

21 January 2018

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The Functional Genomics of Noncoding RNA

21 January 2018

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21 January 2018

Identifiers

DOI

10.1139/O09-043

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21 August 2017

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