(Q37631226)

21 August 2017

The Gpr1/Zdbf2 locus provides new paradigms for transient and dynamic genomic imprinting in mammals (English)

1 reference

21 August 2017

Natasha Zamudio

4

0 references

Maxim V Greenberg

Maxim V Greenberg

3

0 references

Sandrine Barbaux

Sandrine Barbaux

8

0 references

Déborah Bourc'his

Déborah Bourc'his

10

0 references

Ikuhiro Okamoto

7

Ikuhiro Okamoto

1 reference

21 August 2017

Rachel Duffié

1

1 reference

21 August 2017

Sophie Ajjan

2

1 reference

21 August 2017

Martin Escamilla del Arenal

5

1 reference

21 August 2017

Julian Iranzo

6

1 reference

21 August 2017

Patricia Fauque

9

1 reference

21 August 2017

1 March 2014

1 reference

21 August 2017

16

1 reference

inferred from page(s)

published in

Genes & Development

1 reference

21 August 2017

28

1 reference

21 August 2017

5

1 reference

21 August 2017

463-478

1 reference

describes a project that uses

21 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3950344/fullTextXML

inferred from PubMed Central ID database lookup

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Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

23 August 2017

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Epigenetic and transcriptional features of the novel human imprinted lncRNA GPR1AS suggest it is a functional ortholog to mouse Zdbf2linc

23 August 2017

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A knockout screen for protein kinases required for the proper meiotic segregation of chromosomes in the fission yeast Schizosaccharomyces pombe.

23 August 2017

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Crystal structure of human CDC7 kinase in complex with its activator DBF4

23 August 2017

1 reference

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Protection against de novo methylation is instrumental in maintaining parent-of-origin methylation inherited from the gametes

23 August 2017

1 reference

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The transcriptional and epigenomic foundations of ground state pluripotency.

23 August 2017

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

23 August 2017

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Critical evaluation of imprinted gene expression by RNA-Seq: a new perspective

23 August 2017

1 reference

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Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

23 August 2017

1 reference

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Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

23 August 2017

1 reference

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A unique regulatory phase of DNA methylation in the early mammalian embryo

23 August 2017

1 reference

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R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

23 August 2017

1 reference

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Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks

23 August 2017

1 reference

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Zinc finger protein ZFP57 requires its co-factor to recruit DNA methyltransferases and maintains DNA methylation imprint in embryonic stem cells via its transcriptional repression domain

23 August 2017

1 reference

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

23 August 2017

1 reference

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In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

lincRNAs act in the circuitry controlling pluripotency and differentiation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

MDM2 regulates MYCN mRNA stabilization and translation in human neuroblastoma cells

23 August 2017

1 reference

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Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

23 August 2017

1 reference

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Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.

23 August 2017

1 reference

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Conserved role of intragenic DNA methylation in regulating alternative promoters

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Detection of nonneutral substitution rates on mammalian phylogenies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Identification of the mouse paternally expressed imprinted gene Zdbf2 on chromosome 1 and its imprinted human homolog ZDBF2 on chromosome 2.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Transcription is required for establishment of germline methylation marks at imprinted genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Dissecting direct reprogramming through integrative genomic analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

The ground state of embryonic stem cell self-renewal

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Small RNA guides for de novo DNA methylation in mammalian germ cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Hyperconserved CpG domains underlie Polycomb-binding sites

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Epigenetic dynamics of imprinted X inactivation during early mouse development

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

The impact of culture on epigenetic properties of pluripotent stem cells and pre-implantation embryos

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Parental epigenetic asymmetry in mammals

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Genomic imprinting: a mammalian epigenetic discovery model

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Developmental regulation of somatic imprints

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Distinguishing epigenetic marks of developmental and imprinting regulation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

High-throughput bisulfite sequencing in mammalian genomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

WAMIDEX: a web atlas of murine genomic imprinting and differential expression

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Trim28 is required for epigenetic stability during mouse oocyte to embryo transition.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Identification of genetic elements that autonomously determine DNA methylation states.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Dnmt3L and the establishment of maternal genomic imprints.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Imprinted DNA methylation reprogramming during early mouse embryogenesis at theGpr1-Zdbf2locus is linked to longcis-intergenic transcription

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950344

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24589776

12 December 2020

inferred from PubMed ID database lookup

Complex gene conversion events in germline mutation at human minisatellites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24589776

12 December 2020

inferred from PubMed ID database lookup

Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24589776

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GAD.232058.113

1 reference

21 August 2017

1 reference

21 August 2017

1 reference