(Q37636974)

21 August 2017

1 reference

title

Experimental and computational determination of tRNA dynamics (English)

1 reference

21 August 2017

author

Zaida Luthey-Schulten

series ordinal

3

object named as

Zaida Luthey-Schulten

1 reference

21 August 2017

2

John Eargle

1 reference

21 August 2017

Rebecca W Alexander

1

1 reference

21 August 2017

language of work or name

English

0 references

publication date

1 January 2010

1 reference

21 August 2017

1 reference

21 August 2017

volume

584

1 reference

21 August 2017

issue

2

1 reference

21 August 2017

page(s)

376-386

1 reference

Emergence of the universal genetic code imprinted in an RNA record

21 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Universal rules and idiosyncratic features in tRNA identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Dynamics of Recognition between tRNA and elongation factor Tu

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Three-dimensional structure of yeast phenylalanine transfer RNA at 3. 0Å resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Structure of yeast phenylalanine tRNA at 3 Å resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Compilation of tRNA sequences and sequences of tRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

The integrated microbial genomes (IMG) system

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Rules that govern tRNA identity in protein synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Anticodon-dependent conservation of bacterial tRNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

The tRNA specificity of Thermus thermophilus EF-Tu

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Synthesis of aspartyl-tRNA(Asp) in Escherichia coli--a snapshot of the second step

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrates binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Shape-selective RNA recognition by cysteinyl-tRNA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Crystallization of leucyl-tRNA synthetase complexed with tRNALeu from the archaeon Pyrococcus horikoshii

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Activation of microhelix charging by localized helix destabilization

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Conformational flexibility of tRNA: structural changes in yeast tRNA(Asp) upon binding to aspartyl-tRNA synthetase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

RNA-Protein Mutually Induced Fit: STRUCTURE OF ESCHERICHIA COLI ISOPENTENYL-tRNA TRANSFERASE IN COMPLEX WITH tRNA(Phe)

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Snapshots of Dynamics in Synthesizing N 6 -Isopentenyladenosine at the tRNA Anticodon

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

How U38, 39, and 40 of Many tRNAs Become the Targets for Pseudouridylation by TruA

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Structure of the 70S ribosome complexed with mRNA and tRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Formation of the First Peptide Bond: The Structure of EF-P Bound to the 70S Ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Summary: the modified nucleosides of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

MODOMICS: a database of RNA modification pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Development and testing of a general amber force field

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

The RNA Ontology Consortium: an open invitation to the RNA community

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Post-transcriptional nucleotide modification and alternative folding of RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

A counterintuitive Mg2+-dependent and modification-assisted functional folding of mitochondrial tRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Pseudouridine in RNA: what, where, how, and why

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Stabilization of RNA stacking by pseudouridine

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

tRNA tertiary structure in solution as probed by the photochemically induced 8-13 cross-link

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe)

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Comparison of the global structure and dynamics of native and unmodified tRNAval.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Global flexibility of tertiary structure in RNA: yeast tRNAPhe as a model system

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Variation of the acceptor-anticodon interstem angles among mitochondrial and non-mitochondrial tRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Core flexibility of a truncated metazoan mitochondrial tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Transfer RNA in the hybrid P/E state: correlating molecular dynamics simulations with cryo-EM data

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

21 January 2018

Aminoacyl-tRNA synthesis

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

DNA polymerases and aminoacyl-tRNA synthetases: shared mechanisms for ensuring the fidelity of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Correlation of deformability at a tRNA recognition site and aminoacylation specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Surprising contribution to aminoacylation and translation of non-Watson-Crick pairs in tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Determinants in tRNA for activation of arginyl-tRNA synthetase: evidence that tRNA flexibility is required for the induced-fit mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

HIV-1 reverse transcription initiation: a potential target for novel antivirals?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Intra-tRNA distance measurements for nucleocapsid proteindependent tRNA unwinding during priming of HIV reverse transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Mechanistic insights into the kinetics of HIV-1 nucleocapsid protein-facilitated tRNA annealing to the primer binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

tRNA dynamics on the ribosome during translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

The role of fluctuations in tRNA selection by the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

An active role for tRNA in decoding beyond codon:anticodon pairing

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Synthesis and functional activity of tRNAs labeled with fluorescent hydrazides in the D-loop

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Molecular dynamics simulations of solvated yeast tRNA(Asp).

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Dynamical networks in tRNA:protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Simulating movement of tRNA into the ribosome during decoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Dynamics of transfer RNAs analyzed by normal mode calculation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Global ribosome motions revealed with elastic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Analyzing the flexibility of RNA structures by constraint counting

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Dynamics of tRNA at different levels of hydration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

CHARMM force field parameters for simulation of reactive intermediates in native and thio-substituted ribozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

SwS: a solvation web service for nucleic acids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Comparison of tRNA motions in the free and ribosomal bound structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Dependency map of proteins in the small ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

A coarse grain model for DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

A guide to ions and RNA structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Molecular dynamics simulations of nucleic acid-protein complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Variations in the fast folding rates of the lambda-repressor: a hybrid molecular dynamics study

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Domain-domain communication in aminoacyl-tRNA synthetases

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Allosteric regulation and catalysis emerge via a common route.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Community structure in social and biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Uncovering the overlapping community structure of complex networks in nature and society

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Single-molecule observations of ribosome function

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Following movement of the L1 stalk between three functional states in single ribosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Force field bias in protein folding simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Long-timescale molecular dynamics simulations of protein structure and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Distinct kinetic mechanisms of the two classes of Aminoacyl-tRNA synthetases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

An aminoacyl-tRNA synthetase:elongation factor complex for substrate channeling in archaeal translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

Heteronuclear NMR studies of the interaction of tRNA3Lys with HIV-1 nucleocapsid protein11Edited by M. F. Summers

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2009.11.061

10.1016/J.FEBSLET.2009.11.061

21 January 2018

Identifiers

DOI

1 reference

21 August 2017

1 reference