(Q37672690)

21 August 2017

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time (English)

1 reference

21 August 2017

0 references

6

Wilfried Thuiller

1 reference

21 August 2017

5

Sébastien Lavergne

1 reference

21 August 2017

Florent Mazel

2

0 references

Mathieu Groussin

object named as

Mathieu Groussin

series ordinal

1

0 references

Jon G. Sanders

series ordinal

3

object named as

Jon G Sanders

1 reference

21 August 2017

7

Eric J Alm

1 reference

21 August 2017

Chris S Smillie

4

1 reference

PMC publication ID

5331214

21 August 2017

language of work or name

English

0 references

publication date

23 February 2017

1 reference

21 August 2017

Nature Communications

1 reference

21 August 2017

8

1 reference

21 August 2017

14319

1 reference

Creative Commons Attribution 4.0 International

21 August 2017

start time

23 February 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms14319

0 references

cites work

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Cospeciation of gut microbiota with hominids

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The Hologenome Concept: Helpful or Hollow?

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Microbiomes in light of traits: A phylogenetic perspective

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Host genetic variation impacts microbiome composition across human body sites

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Diet dominates host genotype in shaping the murine gut microbiota

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Human genetics shape the gut microbiome.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Convergence of gut microbiomes in myrmecophagous mammals

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Efficient exploration of the space of reconciled gene trees

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Oxygen, ecology, and the Cambrian radiation of animals

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Lateral gene transfer from the dead

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Gut immune maturation depends on colonization with a host-specific microbiota

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Human gut microbiome viewed across age and geography

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Tempo of trophic evolution and its impact on mammalian diversification

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

UCHIME improves sensitivity and speed of chimera detection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Evolutionary transitions in bacterial symbiosis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Evolutionary relationships of wild hominids recapitulated by gut microbial communities

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Search and clustering orders of magnitude faster than BLAST

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Comparative metagenomics and population dynamics of the gut microbiota in mother and infant

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

A core gut microbiome in obese and lean twins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Genomics and evolution of heritable bacterial symbionts

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Evolution of mammals and their gut microbes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The delayed rise of present-day mammals

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Strict host-symbiont cospeciation and reductive genome evolution in insect gut bacteria

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

UniFrac: a new phylogenetic method for comparing microbial communities

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

APE: Analyses of Phylogenetics and Evolution in R language

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The detection of disease clustering and a generalized regression approach

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The neighbor-joining method: a new method for reconstructing phylogenetic trees

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The effect of host genetics on the gut microbiome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

The ecological coherence of high bacterial taxonomic ranks

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

Estimating divergence times in large phylogenetic trees

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5331214

EltonTraits 1.0: Species-level foraging attributes of the world's birds and mammals

1 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS14319

7 January 2021

Vegetation of the Siskiyou Mountains, Oregon and California

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS14319

7 January 2021

An Ordination of the Upland Forest Communities of Southern Wisconsin

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS14319

7 January 2021

Theade4Package: Implementing the Duality Diagram for Ecologists

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS14319

7 January 2021

Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS14319

7 January 2021

Studying beta diversity: ecological variation partitioning by multiple regression and canonical analysis

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS14319

7 January 2021

Identifiers

DOI

10.1038/NCOMMS14319

1 reference

21 August 2017

0 references

1 reference

PMC publication ID

5331214

21 August 2017

PubMed publication ID

28230052

1 reference

PMC publication ID

5331214