(Q37680449)

21 August 2017

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model (English)

1 reference

21 August 2017

1 reference

2

1 reference

21 August 2017

4

1 reference

21 August 2017

Denise Kühnert

1

0 references

author name string

Timothy G Vaughan

series ordinal

3

1 reference

21 August 2017

26 February 2014

1 reference

Journal of the Royal Society Interface

21 August 2017

1 reference

21 August 2017

11

1 reference

21 August 2017

94

1 reference

21 August 2017

20131106

1 reference

Recursive algorithms for phylogenetic tree counting

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmission

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Coalescent inference for infectious disease: meta-analysis of hepatitis C.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

HIV treatment as prevention: systematic comparison of mathematical models of the potential impact of antiretroviral therapy on HIV incidence in South Africa

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Complex population dynamics and the coalescent under neutrality

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Phylogenetic and epidemic modeling of rapidly evolving infectious diseases

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Inference for nonlinear epidemiological models using genealogies and time series

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Estimating the basic reproductive number from viral sequence data.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Phylodynamics of hepatitis C virus subtype 2c in the province of Córdoba, Argentina

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Sampling-through-time in birth-death trees

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Viral phylodynamics and the search for an 'effective number of infections'.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

The case for expanding access to highly active antiretroviral therapy to curb the growth of the HIV epidemic

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Unifying the epidemiological and evolutionary dynamics of pathogens

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

The epidemic behavior of the hepatitis C virus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

A New Statistical Method for Haplotype Reconstruction from Population Data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Estimation of population growth or decline in genetically monitored populations.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

Cohort profile: the Swiss HIV Cohort study

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3973358

A Contribution to the Mathematical Theory of Epidemics

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSIF.2013.1106

Monte Carlo sampling methods using Markov chains and their applications

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSIF.2013.1106

The creation of a large UK-based multicentre cohort of HIV-infected individuals: The UK Collaborative HIV Cohort (UK CHIC) Study

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSIF.2013.1106

21 January 2018

Identifiers

DOI

10.1098/RSIF.2013.1106

1 reference

21 August 2017

1 reference

1 reference

PMC publication ID

3973358

21 August 2017

PubMed publication ID

24573331

1 reference

PMC publication ID

3973358