(Q37697916)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Sequence signatures extracted from proximal promoters can be used to predict distal enhancers (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

4

1 reference

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28 February 2020

Leila Taher

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

author name string

Robin P Smith

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Mee J Kim

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Ivan Ovcharenko

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

language of work or name

1 reference

1 January 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

page(s)

R117

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos

28 February 2020

cites work

1 reference

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The evolution of lineage-specific regulatory activities in the human embryonic limb

23 August 2017

1 reference

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23 August 2017

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Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

23 August 2017

1 reference

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The long-range interaction landscape of gene promoters

23 August 2017

1 reference

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The accessible chromatin landscape of the human genome

23 August 2017

1 reference

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An integrated encyclopedia of DNA elements in the human genome

23 August 2017

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A map of the cis-regulatory sequences in the mouse genome

23 August 2017

1 reference

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Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control.

23 August 2017

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

23 August 2017

1 reference

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

23 August 2017

1 reference

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Large-scale discovery of enhancers from human heart tissue

23 August 2017

1 reference

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Discriminative prediction of mammalian enhancers from DNA sequence.

23 August 2017

1 reference

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A user's guide to the encyclopedia of DNA elements (ENCODE)

23 August 2017

1 reference

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Mapping and analysis of chromatin state dynamics in nine human cell types

23 August 2017

1 reference

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Functional characterization of liver enhancers that regulate drug-associated transporters.

23 August 2017

1 reference

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Towards a knowledge-based Human Protein Atlas

23 August 2017

1 reference

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Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions

23 August 2017

1 reference

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A map of human genome variation from population-scale sequencing

23 August 2017

1 reference

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Tissue-specific and ubiquitous expression patterns from alternative promoters of human genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Shadow enhancers foster robustness of Drosophila gastrulation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

ChIP-Seq identification of weakly conserved heart enhancers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Mediator and cohesin connect gene expression and chromatin architecture

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Nuclear Factor (NF) kappaB polymorphism is associated with heart function in patients with heart failure

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Sequence features that drive human promoter function and tissue specificity

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

A quantitative model of transcriptional regulation reveals the influence of binding location on expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Genomics of long-range regulatory elements

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

23 August 2017

1 reference

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Myc controls transcriptional regulation of cardiac metabolism and mitochondrial biogenesis in response to pathological stress in mice

23 August 2017

1 reference

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The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation

23 August 2017

1 reference

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Genome-wide discovery of human heart enhancers

23 August 2017

1 reference

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The NCBI BioSystems database

23 August 2017

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Genomic views of distant-acting enhancers

23 August 2017

1 reference

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CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses

23 August 2017

1 reference

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Long-range regulation at the SOX9 locus in development and disease

23 August 2017

1 reference

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ChIP-seq accurately predicts tissue-specific activity of enhancers

23 August 2017

1 reference

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The GOA database in 2009--an integrated Gene Ontology Annotation resource

23 August 2017

1 reference

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The functional consequences of alternative promoter use in mammalian genomes

23 August 2017

1 reference

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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

23 August 2017

1 reference

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High-resolution mapping and characterization of open chromatin across the genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Distinguishing protein-coding and noncoding genes in the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

23 August 2017

1 reference

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ORegAnno: an open-access community-driven resource for regulatory annotation

23 August 2017

1 reference

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Genomic regulatory blocks underlie extensive microsynteny conservation in insects

23 August 2017

1 reference

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28-way vertebrate alignment and conservation track in the UCSC Genome Browser

23 August 2017

1 reference

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Mammalian RNA polymerase II core promoters: insights from genome-wide studies

23 August 2017

1 reference

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Predicting tissue-specific enhancers in the human genome

23 August 2017

1 reference

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

23 August 2017

1 reference

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ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes

23 August 2017

1 reference

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In vivo enhancer analysis of human conserved non-coding sequences

23 August 2017

1 reference

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Transcriptional Regulatory Elements in the Human Genome

23 August 2017

1 reference

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DNA motifs in human and mouse proximal promoters predict tissue-specific expression

23 August 2017

1 reference

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A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

23 August 2017

1 reference

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The UCSC Genome Browser Database: update 2006

23 August 2017

1 reference

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TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

23 August 2017

1 reference

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TiProD: the Tissue-specific Promoter Database.

23 August 2017

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

23 August 2017

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

23 August 2017

1 reference

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Promoter features related to tissue specificity as measured by Shannon entropy

23 August 2017

1 reference

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Highly conserved non-coding sequences are associated with vertebrate development

23 August 2017

1 reference

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Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes

23 August 2017

1 reference

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The ENCODE (ENCyclopedia Of DNA Elements) Project

23 August 2017

1 reference

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Gene-Ontology analysis reveals association of tissue-specific 5' CpG-island genes with development and embryogenesis

23 August 2017

1 reference

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A gene atlas of the mouse and human protein-encoding transcriptomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Control of pancreas and liver gene expression by HNF transcription factors

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Scanning Human Gene Deserts for Long-Range Enhancers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Transcription regulation and animal diversity

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

The RNA polymerase II core promoter

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

The human genome browser at UCSC

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Molecular cloning and characterization of two novel retinoic acid-inducible orphan G-protein-coupled receptors (GPRC5B and GPRC5C).

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Gene ontology: tool for the unification of biology

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

High levels of foreign gene expression in hepatocytes after tail vein injections of naked plasmid DNA.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Methods and statistics for combining motif match scores

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Altered constitutive expression of fatty acid-metabolizing enzymes in mice lacking the peroxisome proliferator-activated receptor alpha (PPARalpha)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Functional redundancy in the tissue-specific enhancer of the Drosophila Sgs-4 gene

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Liver-enriched transcription factor HNF-4 is a novel member of the steroid hormone receptor superfamily

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Predicting cell-type-specific gene expression from regions of open chromatin

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Genomic approaches towards finding cis-regulatory modules in animals

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

A regulatory archipelago controls Hox genes transcription in digits

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Genome‐wide maps of transcription regulatory elements

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Shadow enhancers as a source of evolutionary novelty

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Regulation of inducible and tissue-specific gene expression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Sp1 and Sp3 regulate glucokinase gene transcription in the liver of gilthead sea bream (Sparus aurata).

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

cis-acting control elements for Krüppel expression in the Drosophila embryo

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Expression of COUP-TFII in metabolic tissues during development.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Transcripts and CpG islands associated with the pro-opiomelanocortin gene and other neurally expressed genes

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

A far-downstream hepatocyte-specific control region directs expression of the linked human apolipoprotein E and C-I genes in transgenic mice

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Spatial and temporal control elements of the Drosophila engrailed gene.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Transcriptional features of genomic regulatory blocks

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Protein kinase A suppresses sterol regulatory element-binding protein-1C expression via phosphorylation of liver X receptor in the liver.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

Long-range upstream and downstream enhancers control distinct subsets of the complex spatiotemporal Sox9 expression pattern

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

The role of liver X receptor-alpha in the fatty acid regulation of hepatic gene expression

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3983659

De novo DNA synthesis using single molecule PCR.

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2013-14-10-R117

Phenotypic engineering by reprogramming gene transcription using novel artificial transcription factors in Escherichia coli

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2013-14-10-R117

Secondary enhancers synergise with primary enhancers to guarantee fine-tuned muscle gene expression

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2013-14-10-R117

Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24156763

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2013-14-10-R117

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

28 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

24156763

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24156763%20AND%20SRC:MED&resulttype=core&format=json