(Q34357459)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

title

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

0 references

Stephen S. Gisselbrecht

1

1 reference

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5 March 2020

15

Martha L Bulyk

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

author name string

Luis A Barrera

2

1 reference

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5 March 2020

Martin Porsch

3

1 reference

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5 March 2020

Anton Aboukhalil

4

1 reference

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5 March 2020

Preston W Estep

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Anastasia Vedenko

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Alexandre Palagi

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Yongsok Kim

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Xianmin Zhu

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Brian W Busser

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Caitlin E Gamble

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Antonina Iagovitina

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Aditi Singhania

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Alan M Michelson

14

1 reference

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5 March 2020

publication date

14 July 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

page(s)

774-780

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nmeth.2558

5 March 2020

exact match

0 references

cites work

Genome-wide quantitative enhancer activity maps identified by STARR-seq

1 reference

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Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network

6 July 2018

1 reference

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i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

LOESS correction for length variation in gene set-based genomic sequence analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Massively parallel functional dissection of mammalian enhancers in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

modMine: flexible access to modENCODE data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Pioneer transcription factors: establishing competence for gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

H3K4 tri-methylation provides an epigenetic signature of active enhancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Mapping and analysis of chromatin state dynamics in nine human cell types

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Identification of functional elements and regulatory circuits by Drosophila modENCODE

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Differential expression analysis for sequence count data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Functional cis-regulatory genomics for systems biology

6 July 2018

1 reference

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Transgene excision in zebrafish using the phiC31 integrase

6 July 2018

1 reference

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Combinatorial binding predicts spatio-temporal cis-regulatory activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

The complex spatio-temporal regulation of the Drosophila myoblast attractant gene duf/kirre

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Improved protocols for the illumina genome analyzer sequencing system

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Histone modifications at human enhancers reflect global cell-type-specific gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Tools for neuroanatomy and neurogenetics in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Systematic identification of mammalian regulatory motifs' target genes and functions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Predicting gene expression from sequence: a reexamination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

A core transcriptional network for early mesoderm development in Drosophila melanogaster

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

From genetics to epigenetics: the tale of Polycomb group and trithorax group genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Computational prediction of transcription-factor binding site locations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Phage integrases for the construction and manipulation of transgenic mammals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Site-specific genomic integration in mammalian cells mediated by phage phiC31 integrase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

tinman and bagpipe: two homeo box genes that determine cell fates in the dorsal mesoderm of Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

The twist gene: isolation of a Drosophila zygotic gene necessary for the establishment of dorsoventral pattern

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

Mammalian CD2 is an effective heterologous marker of the cell surface in Drosophila.

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2558

Transcription of the myogenic regulatory gene Mef2 in cardiac, somatic, and visceral muscle cell lineages is regulated by a Tinman-dependent core enhancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2558

Patterns of gene expression during Drosophila mesoderm development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2558

Ras pathway specificity is determined by the integration of multiple signal-activated and tissue-restricted transcription factors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2558

Drosophila Lame duck, a novel member of the Gli superfamily, acts as a key regulator of myogenesis by controlling fusion-competent myoblast development

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

GFP and beta-galactosidase transformation vectors for promoter/enhancer analysis in Drosophila

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733245

27 October 2018

Identifiers

DOI

10.1038/NMETH.2558

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

5 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23852450%20AND%20SRC:MED&resulttype=core&format=json