(Q37701268)

22 August 2017

MLV integration site selection is driven by strong enhancers and active promoters (English)

1 reference

22 August 2017

Matthew C LaFave

1

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Gaurav K. Varshney

object named as

Gaurav K Varshney

series ordinal

2

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Shawn M. Burgess

object named as

Shawn M Burgess

series ordinal

6

0 references

Andreas D Baxevanis

series ordinal

5

object named as

Andreas D Baxevanis

1 reference

22 August 2017

4

Tyra G Wolfsberg

1 reference

22 August 2017

3

Derek E Gildea

1 reference

22 August 2017

language of work or name

English

0 references

publication date

23 January 2014

1 reference

22 August 2017

Nucleic Acids Research

1 reference

22 August 2017

42

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22 August 2017

7

1 reference

22 August 2017

4257-4269

1 reference

describes a project that uses

22 August 2017

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=3985626

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Bromo- and extraterminal domain chromatin regulators serve as cofactors for murine leukemia virus integration

23 August 2017

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BET proteins promote efficient murine leukemia virus integration at transcription start sites

23 August 2017

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23 August 2017

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

23 August 2017

1 reference

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23 August 2017

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23 August 2017

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Gammaretroviral vector integration occurs overwhelmingly within and near DNase hypersensitive sites

23 August 2017

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23 August 2017

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Mapping and analysis of chromatin state dynamics in nine human cell types

23 August 2017

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A method to sequence and quantify DNA integration for monitoring outcome in gene therapy

23 August 2017

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Deciphering the code for retroviral integration target site selection

23 August 2017

1 reference

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Dynamics of gene-modified progenitor cells analyzed by tracking retroviral integration sites in a human SCID-X1 gene therapy trial

23 August 2017

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23 August 2017

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Endogenous retroviral LTRs as promoters for human genes: a critical assessment.

23 August 2017

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

23 August 2017

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Using retroviruses as a mutagenesis tool to explore the zebrafish genome.

23 August 2017

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Evolution of human endogenous retroviral sequences: a conceptual account

23 August 2017

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Insertional mutagenesis combined with acquired somatic mutations causes leukemogenesis following gene therapy of SCID-X1 patients

23 August 2017

1 reference

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Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1

23 August 2017

1 reference

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Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.

23 August 2017

1 reference

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

23 August 2017

1 reference

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HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Selection of target sites for mobile DNA integration in the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Foamy virus vector integration sites in normal human cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Distinct genomic integration of MLV and SIV vectors in primate hematopoietic stem and progenitor cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Transcription start regions in the human genome are favored targets for MLV integration

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Retroelement distributions in the human genome: variations associated with age and proximity to genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

HIV-1 integration in the human genome favors active genes and local hotspots

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

The human genome browser at UCSC

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Characterization of enhancer elements in the long terminal repeat of Moloney murine sarcoma virus.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Retroviral-mediated gene therapy--safety considerations and preclinical studies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Cytogenetics of the chronic myeloid leukemia-derived cell line K562: karyotype clarification by multicolor fluorescence in situ hybridization, comparative genomic hybridization, and locus-specific fluorescence in situ hybridization

23 August 2017

1 reference

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Biosafety of onco-retroviral vectors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

Gammaretroviral integration into nucleosomal target DNA in vivo

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

A comprehensive karyotypic study on human hepatocellular carcinoma by spectral karyotyping.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

T lymphocyte-directed gene therapy for ADA- SCID: initial trial results after 4 years.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985626

An integrated encyclopedia of DNA elements in the human genome

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1399

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1399

21 January 2018

Identifiers

DOI

10.1093/NAR/GKT1399

1 reference

22 August 2017

1 reference

22 August 2017

PubMed publication ID

24464997

1 reference