(Q37816217)

23 August 2017

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title

In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling (English)

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23 August 2017

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Geobacter

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3

Derek R Lovley

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23 August 2017

2

Bernhard Ø Palsson

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23 August 2017

Radhakrishnan Mahadevan

series ordinal

1

object named as

Radhakrishnan Mahadevan

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23 August 2017

language of work or name

English

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publication date

6 December 2010

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Nature Reviews Microbiology

23 August 2017

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23 August 2017

9

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23 August 2017

39-50

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23 August 2017

1

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maintained by WikiProject

23 August 2017

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https://scigraph.springernature.com/pub.10.1038/nrmicro2456

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cites work

Reconstruction of biochemical networks in microorganisms

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Applications of genome-scale metabolic reconstructions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

A protocol for generating a high-quality genome-scale metabolic reconstruction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Towards multidimensional genome annotation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

What is flux balance analysis?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Understanding human metabolic physiology: a genome-to-systems approach

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Global reconstruction of the human metabolic network based on genomic and bibliomic data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Dissimilatory Fe(III) and Mn(IV) reduction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Anaerobic production of magnetite by a dissimilatory iron-reducing microorganism

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Oxidation of aromatic contaminants coupled to microbial iron reduction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Geobacter lovleyi sp. nov. strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Microbial reduction of uranium

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Vanadium respiration by Geobacter metallireducens: novel strategy for in situ removal of vanadium from groundwater

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Humic substances as electron acceptors for microbial respiration

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Dissimilatory metal reduction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Stimulating the In Situ Activity of Geobacter Species To Remove Uranium from the Groundwater of a Uranium-Contaminated Aquifer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Dominance of Geobacteraceae in BTX-degrading enrichments from an iron-reducing aquifer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Stimulated anoxic biodegradation of aromatic hydrocarbons using Fe(III) ligands

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Electrode-reducing microorganisms that harvest energy from marine sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Comparison of anode bacterial communities and performance in microbial fuel cells with different electron donors.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Evaluation of energy-conversion efficiencies in microbial fuel cells (MFCs) utilizing fermentable and non-fermentable substrates

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Quantum dots encapsulated with amphiphilic alginate as bioprobe for fast screening anti-dengue virus agents

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Graphite electrodes as electron donors for anaerobic respiration

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Remediation and recovery of uranium from contaminated subsurface environments with electrodes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Geobacter sulfurreducens strain engineered for increased rates of respiration

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genome-scale constraint-based modeling of Geobacter metallireducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Properties of metabolic networks: structure versus function

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Thermodynamic analysis of regulation in metabolic networks using constraint-based modeling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Global organization of metabolic fluxes in the bacterium Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

The large-scale organization of metabolic networks

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

The degree of redundancy in metabolic genes is linked to mode of metabolism

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Extracellular electron transfer via microbial nanowires

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Bug juice: harvesting electricity with microorganisms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Alignment of the c-type cytochrome OmcS along pili of Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Purification and characterization of OmcZ, an outer-surface, octaheme c-type cytochrome essential for optimal current production by Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Growth of Geobacter sulfurreducens under nutrient-limiting conditions in continuous culture

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Extracellular electron transfer: wires, capacitors, iron lungs, and more

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Lack of production of electron-shuttling compounds or solubilization of Fe(III) during reduction of insoluble Fe(III) oxide by Geobacter metallireducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Electricity production by Geobacter sulfurreducens attached to electrodes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Shewanella secretes flavins that mediate extracellular electron transfer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Electricity generation by Geobacter sulfurreducens attached to gold electrodes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Mechanisms for Fe(III) Oxide Reduction in Sedimentary Environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Evidence for involvement of an electron shuttle in electricity generation by Geothrix fermentans.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

A role for excreted quinones in extracellular electron transfer.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

The microbe electric: conversion of organic matter to electricity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

In silico design and adaptive evolution of Escherichia coli for production of lactic acid.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Assessment of indigenous reductive dechlorinating potential at a TCE-contaminated site using microcosms, polymerase chain reaction analysis, and site data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Anaerobic microbial reductive dechlorination of tetrachloroethene to predominately trans-1,2-dichloroethene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Characterizing the metabolism of Dehalococcoides with a constraint-based model

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

High-throughput generation, optimization and analysis of genome-scale metabolic models

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Cultivating the uncultured

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

The Uncultured Microbial Majority

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genomic sequencing of single microbial cells from environmental samples

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genomic DNA amplification by the multiple displacement amplification (MDA) method

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Metabolic modeling of a mutualistic microbial community.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2456

Characterization of proton production and consumption associated with microbial metabolism

31 March 2020

1 reference

12 December 2020

Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer

1 reference

12 December 2020

Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese

1 reference

12 December 2020

Toward whole cell modeling and simulation: comprehensive functional genomics through the constraint-based approach

1 reference

12 December 2020

Dissimilatory Fe(III) and Mn(IV) reduction

1 reference

12 December 2020

Rapid Anaerobic Benzene Oxidation with a Variety of Chelated Fe(III) Forms.

1 reference

12 December 2020

Improvement of the anodic bioelectrocatalytic activity of mixed culture biofilms by a simple consecutive electrochemical selection procedure

1 reference

12 December 2020

Anaerobic Oxidation of Toluene, Phenol, and p-Cresol by the Dissimilatory Iron-Reducing Organism, GS-15

1 reference

12 December 2020

Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO2456

1 reference

23 August 2017

1 reference