(Q37822128)

23 August 2017

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title

Some remarks on protein attribute prediction and pseudo amino acid composition (English)

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23 August 2017

1

Kuo-Chen Chou

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PubMed ID

21168420

23 August 2017

language of work or name

English

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publication date

17 December 2010

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23 August 2017

12

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Journal of Theoretical Biology

inferred from page(s)

published in

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23 August 2017

273

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23 August 2017

1

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23 August 2017

236-247

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PubMed ID

21168420

maintained by WikiProject

23 August 2017

WikiProject Mathematics

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cites work

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition.

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12 December 2020

Using fourier spectrum analysis and pseudo amino acid composition for prediction of membrane protein types

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Structure and mechanism of the M2 proton channel of influenza A virus

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Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates

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Amino Acid Principal Component Analysis (AAPCA) and its applications in protein structural class prediction.

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Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

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Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks

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Recent progress in protein subcellular location prediction

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Identification of proteases and their types

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Predicting enzyme subclasses by using support vector machine with composite vectors

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12 December 2020

Using GO-PseAA predictor to predict enzyme sub-class.

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12 December 2020

Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features

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12 December 2020

Prediction and classification of protein subcellular location-sequence-order effect and pseudo amino acid composition

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12 December 2020

Modelling extracellular domains of GABA-A receptors: subtypes 1, 2, 3, and 5.

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Structural bioinformatics and its impact to biomedical science

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Boosting classifier for predicting protein domain structural class.

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Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition

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12 December 2020

Cross-validation of protein structural class prediction using statistical clustering and neural networks

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12 December 2020

Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network.

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12 December 2020

Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

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12 December 2020

Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition.

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12 December 2020

Using neural networks for prediction of the subcellular location of proteins

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12 December 2020

Using pseudo amino acid composition to predict transmembrane regions in protein: cellular automata and Lempel-Ziv complexity

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12 December 2020

Using Chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach

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12 December 2020

Quat-2L: a web-server for predicting protein quaternary structural attributes

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12 December 2020

The COG database: an updated version includes eukaryotes

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12 December 2020

Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach.

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12 December 2020

Prediction and classification of domain structural classes.

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12 December 2020

Prediction of protein structural classes and subcellular locations

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12 December 2020

Applying chemometrics approaches to model and predict the binding affinities between the human amphiphysin SH3 domain and its peptide ligands

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12 December 2020

The Gene Ontology (GO) database and informatics resource

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12 December 2020

An extension of Chou's graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways

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12 December 2020

A novel approach to predict protein-protein interactions related to Alzheimer's disease based on complex network

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12 December 2020

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

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12 December 2020

Predicting protein-protein interactions from sequences in a hybridization space

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12 December 2020

Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes

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12 December 2020

Structural patterns in globular proteins

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12 December 2020

Prediction of nuclear receptors with optimal pseudo amino acid composition

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12 December 2020

Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification

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12 December 2020

Using complexity measure factor to predict protein subcellular location.

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12 December 2020

Predicting protein solubility with a hybrid approach by pseudo amino acid composition.

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12 December 2020

The convergence-divergence duality in lectin domains of selectin family and its implications

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12 December 2020

Prediction of protein structural class using novel evolutionary collocation-based sequence representation.

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12 December 2020

Gamma-turn types prediction in proteins using the two-stage hybrid neural discriminant model.

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12 December 2020

Function prediction of hypothetical proteins without sequence similarity to proteins of known function.

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12 December 2020

Diffusion-controlled reactions of enzymes. An approximate analytic solution of Chou's model

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12 December 2020

Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition

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12 December 2020

Prediction of G-protein-coupled receptor classes based on the concept of Chou's pseudo amino acid composition: an approach from discrete wavelet transform.

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12 December 2020

Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites.

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12 December 2020

Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition

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12 December 2020

GPCR-GIA: a web-server for identifying G-protein coupled receptors and their families with grey incidence analysis.

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12 December 2020

Predicting protein structural class based on multi-features fusion.

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12 December 2020

ProtIdent: a web server for identifying proteases and their types by fusing functional domain and sequential evolution information

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12 December 2020

Predicting protease types by hybridizing gene ontology and pseudo amino acid composition

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12 December 2020

PRINTR: prediction of RNA binding sites in proteins using SVM and profiles.

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12 December 2020

Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes

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12 December 2020

Application of pseudo amino acid composition for predicting protein subcellular location: stochastic signal processing approach.

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12 December 2020

Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization

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12 December 2020

Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction

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12 December 2020

Predicting protein subcellular location by fusing multiple classifiers

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12 December 2020

Improved prediction of subcellular location for apoptosis proteins by the dual-layer support vector machine

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12 December 2020

Predicting enzyme family class in a hybridization space.

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12 December 2020

Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes.

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12 December 2020

Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern.

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12 December 2020

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition

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12 December 2020

A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology

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12 December 2020

Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies.

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12 December 2020

Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

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12 December 2020

SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic K-nearest neighbor (ET-KNN) algorithm.

1 reference

12 December 2020

The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments

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12 December 2020

Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition

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12 December 2020

A further step toward an optimal ensemble of classifiers for peptide classification, a case study: HIV protease.

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12 December 2020

PseAAC: a flexible web server for generating various kinds of protein pseudo amino acid composition

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12 December 2020

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences

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12 December 2020

Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies

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12 December 2020

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition.

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12 December 2020

Prediction of protein structural class by discriminant analysis.

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12 December 2020

[Prediction of G-protein-coupled receptor classes with pseudo amino acid composition]

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12 December 2020

Gene ontology: tool for the unification of biology

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12 December 2020

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

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12 December 2020

Ensemble classifier for protein fold pattern recognition.

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12 December 2020

Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition.

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12 December 2020

Large-scale plant protein subcellular location prediction.

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12 December 2020

Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization

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12 December 2020

A correlation-coefficient method to predicting protein-structural classes from amino acid compositions

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12 December 2020

Prediction of cyclin proteins using Chou's pseudo amino acid composition

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12 December 2020

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

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12 December 2020

Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy

1 reference

12 December 2020

Application of SVM to predict membrane protein types

1 reference

12 December 2020

Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

1 reference

12 December 2020

Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine

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12 December 2020

Use of tetrapeptide signals for protein secondary-structure prediction.

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12 December 2020

Support Vector Machines for Predicting Membrane Protein Types by Using Functional Domain Composition

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12 December 2020

A dynamic model for the p53 stress response networks under ion radiation.

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12 December 2020

Prediction of apoptosis protein locations with genetic algorithms and support vector machines through a new mode of pseudo amino acid composition.

1 reference

12 December 2020

Predicting subcellular localization of gram-negative bacterial proteins by linear dimensionality reduction method

1 reference

12 December 2020

Prediction of G-protein-coupled receptor classes in low homology using Chou's pseudo amino acid composition with approximate entropy and hydrophobicity patterns

1 reference

12 December 2020

Large-scale predictions of gram-negative bacterial protein subcellular locations

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12 December 2020

Bioinformatical analysis of G-protein-coupled receptors.

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12 December 2020

Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, Bessel function, and Chebyshev filter

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12 December 2020

Relation between amino acid composition and cellular location of proteins.

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12 December 2020

Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition.

1 reference

12 December 2020

SMART 5: domains in the context of genomes and networks

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12 December 2020

A key driving force in determination of protein structural classes.

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12 December 2020

GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes

1 reference

12 December 2020

Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant.

1 reference

12 December 2020

A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0

1 reference

12 December 2020

Using pseudo-amino acid composition and support vector machine to predict protein structural class.

1 reference

12 December 2020

Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition.

1 reference

12 December 2020

Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types

1 reference

12 December 2020

Predicting protein fold pattern with functional domain and sequential evolution information

1 reference

12 December 2020

An ensemble classifier of support vector machines used to predict protein structural classes by fusing auto covariance and pseudo-amino acid composition

1 reference

12 December 2020

Predicting DNA- and RNA-binding proteins from sequences with kernel methods

1 reference

12 December 2020

Novel two-stage hybrid neural discriminant model for predicting proteins structural classes.

1 reference

12 December 2020

Prediction of G-protein-coupled receptor classes.

1 reference

12 December 2020

Characterization by NMR and molecular modeling of the binding of polyisoprenols and polyisoprenyl recognition sequence peptides: 3D structure of the complexes reveals sites of specific interactions

1 reference

12 December 2020

Solution NMR structure of the V27A drug resistant mutant of influenza A M2 channel

1 reference

12 December 2020

Enzymes/non-enzymes classification model complexity based on composition, sequence, 3D and topological indices.

1 reference

12 December 2020

Prediction of protein structural classes by Chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis

1 reference

12 December 2020

The flexibility during the juxtaposition of reacting groups and the upper limits of enzyme reactions

1 reference

12 December 2020

Using GO-PseAA predictor to identify membrane proteins and their types

1 reference

12 December 2020

Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites

1 reference

12 December 2020

Who tangos with GOA?-Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools.

1 reference

12 December 2020

SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition

1 reference

12 December 2020

Using pseudo amino acid composition to predict protein subcellular location: approached with amino acid composition distribution.

1 reference

12 December 2020

Prediction of subcellular location of apoptosis proteins using pseudo amino acid composition: an approach from auto covariance transformation.

1 reference

12 December 2020

Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins

1 reference

12 December 2020

Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition

1 reference

12 December 2020

Using the concept of Chou's pseudo amino acid composition to predict enzyme family classes: an approach with support vector machine based on discrete wavelet transform

1 reference

12 December 2020

Solution structure and functional analysis of the influenza B proton channel

1 reference

12 December 2020

Domain structural class prediction.

1 reference

12 December 2020

Pfam: clans, web tools and services

1 reference

12 December 2020

Predicting membrane protein type by functional domain composition and pseudo-amino acid composition

1 reference

12 December 2020

Prediction of protein structural classes by modified mahalanobis discriminant algorithm.

1 reference

12 December 2020

Prediction of protein structural class from the amino acid sequence

1 reference

12 December 2020

Artificial neural network model for predicting membrane protein types.

1 reference

12 December 2020

Using cellular automata images and pseudo amino acid composition to predict protein subcellular location.

1 reference

12 December 2020

Some insights into protein structural class prediction

1 reference

12 December 2020

Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells

1 reference

12 December 2020

Prediction of protein subcellular locations by GO-FunD-PseAA predictor

1 reference

12 December 2020

Using neural networks for prediction of domain structural classes.

1 reference

12 December 2020

Supersecondary structure prediction using Chou's pseudo amino acid composition

1 reference

12 December 2020

Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components.

1 reference

12 December 2020

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions.

1 reference

12 December 2020

Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers

1 reference

12 December 2020

NMR study of the preferred membrane orientation of polyisoprenols (dolichol) and the impact of their complex with polyisoprenyl recognition sequence peptides on membrane structure

1 reference

12 December 2020

Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach

1 reference

12 December 2020

Prediction of protein homo-oligomer types by pseudo amino acid composition: Approached with an improved feature extraction and Naive Bayes Feature Fusion.

1 reference

12 December 2020

Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image

1 reference

12 December 2020

Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation.

1 reference

12 December 2020

A network-QSAR model for prediction of genetic-component biomarkers in human colorectal cancer

1 reference

12 December 2020

Predicting protein subcellular locations with feature selection and analysis

1 reference

12 December 2020

Classification of transcription factors using protein primary structure

1 reference

12 December 2020

Protein subcellular location prediction

1 reference

12 December 2020

Diffusion-controlled reactions of enzymes. A comparison between Chou's model and Alberty-Hammes-Eigen's model

1 reference

12 December 2020

Prediction of Protein Structural Classes

1 reference

12 December 2020

Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network

1 reference

12 December 2020

The folding type of a protein is relevant to the amino acid composition

1 reference

12 December 2020

Microcomputer tools for steady-state enzyme kinetics.

1 reference

12 December 2020

MemType-2L: a web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM.

1 reference

12 December 2020

NMR studies on how the binding complex of polyisoprenol recognition sequence peptides and polyisoprenols can modulate membrane structure

1 reference

12 December 2020

Predicting protein quaternary structure by pseudo amino acid composition

1 reference

12 December 2020

Predicting lipase types by improved Chou's pseudo-amino acid composition

1 reference

12 December 2020

QuatIdent: a web server for identifying protein quaternary structural attribute by fusing functional domain and sequential evolution information

1 reference

12 December 2020

BSFINDER: finding binding sites of HCV proteins using a support vector machine

1 reference

12 December 2020

The structural basis for intramembrane assembly of an activating immunoreceptor complex

1 reference

12 December 2020

Plant-mPLoc: a top-down strategy to augment the power for predicting plant protein subcellular localization

1 reference

12 December 2020

Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins

1 reference

12 December 2020

Evaluating long-term relationship of protein sequence by use of D-interval conditional probability and its impact on protein structural class prediction.

1 reference

12 December 2020

Heads or tails--what determines the orientation of proteins in the membrane.

1 reference

12 December 2020

CDD: a conserved domain database for interactive domain family analysis

1 reference

12 December 2020

Predicting protein folding types by distance functions that make allowances for amino acid interactions.

1 reference

12 December 2020

A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0

1 reference

12 December 2020

EzyPred: a top-down approach for predicting enzyme functional classes and subclasses

1 reference

12 December 2020

An intriguing controversy over protein structural class prediction

1 reference

12 December 2020

Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition.

1 reference

12 December 2020

Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature.

1 reference

12 December 2020

gamma-Turn types prediction in proteins using the support vector machines.

1 reference

12 December 2020

Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition

1 reference

12 December 2020

Prediction of protein cellular attributes using pseudo-amino acid composition

1 reference

12 December 2020

Probing the interaction between the coiled coil leucine zipper of cGMP-dependent protein kinase Ialpha and the C terminus of the myosin binding subunit of the myosin light chain phosphatase

1 reference

12 December 2020

Prediction of membrane protein types by means of wavelet analysis and cascaded neural networks.

1 reference

12 December 2020

Geometry preserving projections algorithm for predicting membrane protein types

1 reference

12 December 2020

Predicting enzyme subclass by functional domain composition and pseudo amino acid composition.

1 reference

12 December 2020

Using pseudo amino acid composition to predict protein structural classes: approached with complexity measure factor.

1 reference

12 December 2020

Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo-amino acid composition

1 reference

12 December 2020

Weighted-support vector machines for predicting membrane protein types based on pseudo-amino acid composition.

1 reference

12 December 2020

Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence

1 reference

12 December 2020

Predicting membrane protein types by the LLDA algorithm

1 reference

12 December 2020

Improving discrimination of outer membrane proteins by fusing different forms of pseudo amino acid composition.

1 reference

12 December 2020

Protein function prediction with high-throughput data

1 reference

12 December 2020

Prediction of C-to-U RNA editing sites in plant mitochondria using both biochemical and evolutionary information.

1 reference

12 December 2020

Predicting drug-target interaction networks based on functional groups and biological features

1 reference

12 December 2020

Using Chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location.

1 reference

12 December 2020

Predicting protein structural class by functional domain composition

1 reference

12 December 2020

Predicting protein structural class with AdaBoost Learner.

1 reference

12 December 2020

Subcellular location prediction of apoptosis proteins

1 reference

12 December 2020

A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space

1 reference

12 December 2020

Diffusion-Controlled Reactions of Enzymes

1 reference

12 December 2020

10.1016/J.JTBI.2010.12.024

Identifiers

DOI

1 reference

23 August 2017

0 references

1 reference

PubMed ID

21168420