(Q37828117)

23 August 2017

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title

Understanding and engineering of microbial cells based on proteomics and its conjunction with other omics studies (English)

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23 August 2017

Sang Yup Lee

3

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author name string

Mee-Jung Han

series ordinal

1

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23 August 2017

Jeong Wook Lee

series ordinal

2

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23 August 2017

publication date

13 January 2011

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23 August 2017

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23 August 2017

volume

11

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23 August 2017

issue

4

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23 August 2017

page(s)

721-743

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The Escherichia coli proteome: past, present, and future prospects

23 August 2017

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Decoding protein modifications using top-down mass spectrometry

21 January 2018

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A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen

21 January 2018

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Exploring the precursor ion exclusion feature of liquid chromatography-electrospray ionization quadrupole time-of-flight mass spectrometry for improving protein identification in shotgun proteome analysis

21 January 2018

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Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana.

21 January 2018

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Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

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Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer

21 January 2018

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Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

21 January 2018

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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

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Environmental proteomics: analysis of structure and function of microbial communities.

21 January 2018

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Cold adaptation in the Antarctic Archaeon Methanococcoides burtonii involves membrane lipid unsaturation

21 January 2018

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Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough

21 January 2018

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The proteomic alterations of Thermoanaerobacter tengcongensis cultured at different temperatures

21 January 2018

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Translational and transcriptional analysis of Sulfolobus solfataricus P2 to provide insights into alcohol and ketone utilisation.

21 January 2018

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Proteome analysis of Sulfolobus solfataricus P2 propanol metabolism.

21 January 2018

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Molecular insight into extreme copper resistance in the extremophilic archaeon 'Ferroplasma acidarmanus' Fer1.

21 January 2018

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Effect of high concentration of Co (II) on Enterobacter liquefaciens strain C-1: a bacterium highly resistant to heavy metals with an unknown genome

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000411

Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: towards a catalogue of metal-responsive genes

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000411

Involvement of superoxide dismutases in the response of Escherichia coli to selenium oxides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Transient rates of synthesis of individual polypeptides in E. coli following temperature shifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteome analysis in the study of the bacterial heat-shock response

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Induction of proteins in response to low temperature in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

A proteomic approach toward the selection of proteins with enhanced intrinsic conformational stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

A novel member of the cspA family of genes that is induced by cold shock in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Trehalose synthesis is induced upon exposure of Escherichia coli to cold and is essential for viability at low temperatures

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000411

Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000411

Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000411

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteomic analysis of cold adaptation in a Siberian permafrost bacterium--Exiguobacterium sibiricum 255-15 by two-dimensional liquid separation coupled with mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Acetate and formate stress: opposite responses in the proteome of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

The Effects of Fermentation Acids on Bacterial Growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

pH-dependent catabolic protein expression during anaerobic growth of Escherichia coli K-12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Rerouting of pyruvate metabolism during acid adaptation in Lactobacillus bulgaricus

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteome analysis of Streptococcus mutans metabolic phenotype during acid tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Stress-responsive proteins are upregulated in Streptococcus mutans during acid tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

A comprehensive proteomics and transcriptomics analysis of Bacillus subtilis salt stress adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Global analyses of transcriptomes and proteomes of a parent strain and an L-threonine-overproducing mutant strain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Physiological response of Corynebacterium glutamicum to oxidative stress induced by deletion of the transcriptional repressor McbR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Multiple high-throughput analyses monitor the response of E. coli to perturbations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Robust Salmonella metabolism limits possibilities for new antimicrobials.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteomic profiling of recombinant Escherichia coli in high-cell-density fermentations for improved production of an antibody fragment biopharmaceutical

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Engineering Escherichia coli for increased productivity of serine-rich proteins based on proteome profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

On-line estimation of the metabolic burden resulting from the synthesis of plasmid-encoded and heat-shock proteins by monitoring respiratory energy generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein production: 1. Readjustment of metabolic enzyme synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Monitoring of genes that respond to overproduction of an insoluble recombinant protein in Escherichia coli glucose-limited fed-batch fermentations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteome analysis to assess physiological changes in Escherichia coli grown under glucose-limited fed-batch conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteomic profiling of Escherichia coli proteins under high cell density fed-batch cultivation with overexpression of phosphogluconolactonase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteomic changes in Escherichia coli TG1 after metabolic engineering for enhanced trichloroethene biodegradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteome changes after metabolic engineering to enhance aerobic mineralization of cis-1,2-dichloroethylene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Recombinant protein folding and misfolding in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Soluble expression of recombinant proteins in the cytoplasm of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

GroE heat-shock proteins promote assembly of foreign prokaryotic ribulose bisphosphate carboxylase oligomers in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Roles and applications of small heat shock proteins in the production of recombinant proteins in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

The small heat-shock proteins IbpA and IbpB reduce the stress load of recombinant Escherichia coli and delay degradation of inclusion bodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Transport proteins PotD and Crr of Escherichia coli, novel fusion partners for heterologous protein expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Solubilization of aggregation-prone heterologous proteins by covalent fusion of stress-responsive Escherichia coli protein, SlyD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Enhanced solubility of heterologous proteins by fusion expression using stress-induced Escherichia coli protein, Tsf.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Escherichia coli malate dehydrogenase, a novel solubility enhancer for heterologous proteins synthesized in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Molecular basis of bacterial outer membrane permeability

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

A method for the comprehensive proteomic analysis of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Microbial cell-surface display

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Efficient and stable display of functional proteins on bacterial magnetic particles using mms13 as a novel anchor molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Display of lipase on the cell surface of Escherichia coli using OprF as an anchor and its application to enantioselective resolution in organic solvent

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Simultaneous display of multiple foreign peptides in the FliD capping and FliC filament proteins of the Escherichia coli flagellum

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Display of proteins on Bacillus subtilis endospores

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Targeting of the BclA and BclB proteins to the Bacillus anthracis spore surface

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Surface display of recombinant proteins on Bacillus thuringiensis spores.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Micropatterns of spores displaying heterologous proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteomic analysis of extracellular proteins from Escherichia coli W3110.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Comparison of the extracellular proteomes of Escherichia coli B and K-12 strains during high cell density cultivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Signal peptide-dependent protein transport in Bacillus subtilis: a genome-based survey of the secretome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Excretion of human beta-endorphin into culture medium by using outer membrane protein F as a fusion partner in recombinant Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Extracellular secretion of polypeptides using a modified Escherichia coli flagellar secretion apparatus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteome-based identification of fusion partner for high-level extracellular production of recombinant proteins in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Extracellular accumulation of recombinant proteins fused to the carrier protein YebF in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Engineering HlyA hypersecretion in Escherichia coli based on proteomic and microarray analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Guidelines for the next 10 years of proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Integrative genomic, transcriptional, and proteomic diversity in natural isolates of the human pathogen Burkholderia pseudomallei

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Molecular dynamics of the Shewanella oneidensis response to chromate stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

Proteome-level responses of Escherichia coli to long-chain fatty acids and use of fatty acid inducible promoter in protein production

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000411

21 January 2018

Identifiers

DOI

10.1002/PMIC.201000411

1 reference

23 August 2017

1 reference