(Q37939077)

25 August 2017

1 reference

title

Detecting coevolving positions in a molecule: why and how to account for phylogeny (English)

1 reference

25 August 2017

1 reference

1

1 reference

25 August 2017

24 September 2011

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Briefings in Bioinformatics

25 August 2017

1 reference

25 August 2017

13

1 reference

25 August 2017

228-243

1 reference

25 August 2017

2

1 reference

Evolutionarily conserved pathways of energetic connectivity in protein families

25 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Detecting groups of coevolving positions in a molecule: a clustering approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Functionally compensating coevolving positions are neither homoplasic nor conserved in clades

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Using information theory to search for co-evolving residues in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

A model-based approach for detecting coevolving positions in a molecule.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Detecting coevolving amino acid sites using Bayesian mutational mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Coevolving protein residues: maximum likelihood identification and relationship to structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Detecting coevolution in and among protein domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Exploring a phylogenetic approach for the detection of correlated substitutions in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Assessing the accuracy of prediction algorithms for classification: an overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

ROCR: visualizing classifier performance in R

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

An introduction to ROC analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

How frequent are correlated changes in families of protein sequences?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

Base Pairing Constraints Drive Structural Epistasis in Ribosomal RNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR048

21 January 2018

Identifiers

DOI

10.1093/BIB/BBR048

1 reference

25 August 2017

journals/bib/Dutheil12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

21949241