(Q37945792)

25 August 2017

Algorithms for the de novo sequencing of peptides from tandem mass spectra (English)

1 reference

25 August 2017

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1

1 reference

PubMed ID

21999834

25 August 2017

language of work or name

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1 October 2011

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Expert Review of Proteomics

25 August 2017

1 reference

25 August 2017

8

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25 August 2017

5

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25 August 2017

645-657

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Mass spectrometry-based proteomics

25 August 2017

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

Open mass spectrometry search algorithm

21 January 2018

1 reference

TANDEM: matching proteins with tandem mass spectra

21 January 2018

1 reference

Peptide and protein de novo sequencing by mass spectrometry

21 January 2018

1 reference

Peptidomics coming of age: a review of contributions from a bioinformatics angle.

21 January 2018

1 reference

Automated de novo protein sequencing of monoclonal antibodies

21 January 2018

1 reference

Ion activation methods for tandem mass spectrometry

21 January 2018

1 reference

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

21 January 2018

1 reference

Electron Capture Dissociation of Multiply Charged Protein Cations. A Nonergodic Process

21 January 2018

1 reference

Proposal for a common nomenclature for sequence ions in mass spectra of peptides

21 January 2018

1 reference

De novo sequencing of peptides by MS/MS.

21 January 2018

1 reference

Automated interpretation of high-energy collision-induced dissociation spectra of singly protonated peptides by 'SeqMS', a software aid for de novo sequencing by tandem mass spectrometry

21 January 2018

1 reference

Tandem mass spectrometry methods for definitive protein identification in proteomics research

21 January 2018

1 reference

Efficient and clean charge derivatization of peptides for analysis by mass spectrometry

21 January 2018

1 reference

Improving de novo sequencing of peptides using a charged tag and C-terminal digestion

21 January 2018

1 reference

Improved peptide sequencing using isotope information inherent in tandem mass spectra.

21 January 2018

1 reference

De novo peptide sequencing and identification with precision mass spectrometry

21 January 2018

1 reference

msmsEval: tandem mass spectral quality assignment for high-throughput proteomics.

21 January 2018

1 reference

Proteomics-grade de novo sequencing approach

21 January 2018

1 reference

De novo sequencing, peptide composition analysis, and composition-based sequencing: a new strategy employing accurate mass determination by fourier transform ion cyclotron resonance mass spectrometry

21 January 2018

1 reference

Automatic quality assessment of peptide tandem mass spectra.

21 January 2018

1 reference

Spectral quality assessment for high-throughput tandem mass spectrometry proteomics

21 January 2018

1 reference

Higher-energy C-trap dissociation for peptide modification analysis.

21 January 2018

1 reference

pNovo: de novo peptide sequencing and identification using HCD spectra

21 January 2018

1 reference

Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry

21 January 2018

1 reference

De novo peptide sequencing using exhaustive enumeration of peptide composition

21 January 2018

1 reference

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

21 January 2018

1 reference

An efficient algorithm for sequencing peptides using fast atom bombardment mass spectral data

21 January 2018

1 reference

Determination of the Amino Acid Sequence in Oligopeptides by Computer Interpretation of Their High-Resolution Mass Spectra1

21 January 2018

1 reference

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

21 January 2018

1 reference

A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.

21 January 2018

1 reference

De novo analysis of peptide tandem mass spectra by spectral graph partitioning.

21 January 2018

1 reference

PepNovo: de novo peptide sequencing via probabilistic network modeling

21 January 2018

1 reference

A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry

21 January 2018

1 reference

De novo peptide identification via tandem mass spectrometry and integer linear optimization

21 January 2018

1 reference

Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry

21 January 2018

1 reference

De novo peptide sequencing via tandem mass spectrometry

21 January 2018

1 reference

Fast algorithm for peptide sequencing by mass spectroscopy

21 January 2018

1 reference

AUDENS: a tool for automated peptide de novo sequencing.

21 January 2018

1 reference

A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry.

21 January 2018

1 reference

MSNovo: a dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry

21 January 2018

1 reference

Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.

21 January 2018

1 reference

De novo peptide sequencing based on a divide-and-conquer algorithm and peptide tandem spectrum simulation

21 January 2018

1 reference

NovoHMM: a hidden Markov model for de novo peptide sequencing

21 January 2018

1 reference

Pattern-based algorithm for peptide sequencing from tandem high energy collision-induced dissociation mass spectra

21 January 2018

1 reference

Peptide Fragment Ion Analyser (PFIA): a simple and versatile tool for the interpretation of tandem mass spectrometric data and de novo sequencing of peptides

21 January 2018

1 reference

Modeling and characterization of multi-charge mass spectra for peptide sequencing.

21 January 2018

1 reference

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry

21 January 2018

1 reference

Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

21 January 2018

1 reference

Peptide de novo sequencing using 157 nm photodissociation in a tandem time-of-flight mass spectrometer

21 January 2018

1 reference

Spectrum fusion: using multiple mass spectra for de novo Peptide sequencing

21 January 2018

1 reference

Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry.

21 January 2018

1 reference

Electron capture/transfer versus collisionally activated/induced dissociations: solo or duet?

21 January 2018

1 reference

Charge remote fragmentation in electron capture and electron transfer dissociation

21 January 2018

1 reference

Protein and peptide identification algorithms using MS for use in high-throughput, automated pipelines

21 January 2018

1 reference

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

21 January 2018

1 reference

Assessing peptide de novo sequencing algorithms performance on large and diverse data sets.

21 January 2018

1 reference

Performance evaluation of existing de novo sequencing algorithms.

21 January 2018

1 reference

A comparative study of the accuracy of several de novo sequencing software packages for datasets derived by matrix-assisted laser desorption/ionisation and electrospray

21 January 2018

1 reference

GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model

21 January 2018

1 reference

DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring

21 January 2018

1 reference

Peptide sequence tags for fast database search in mass-spectrometry.

21 January 2018

1 reference

High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.

21 January 2018

1 reference

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching

21 January 2018

1 reference

21 January 2018

1 reference

A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications

21 January 2018

1 reference

Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in Chlamydomonas reinhardtii

21 January 2018

1 reference

A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases

21 January 2018

1 reference

Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics

21 January 2018

1 reference

Spectral profiles, a novel representation of tandem mass spectra and their applications for de novo peptide sequencing and identification

21 January 2018

1 reference

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

1 reference

Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry

21 January 2018

1 reference

2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments

21 January 2018

1 reference

OVNIp: an open source application facilitating the interpretation, the validation and the edition of proteomics data generated by MS analyses and de novo sequencing

21 January 2018

1 reference

De novo protein sequence analysis of Macaca mulatta

21 January 2018

1 reference

Method for Determination of the Amino Acid Sequence in Peptides

21 January 2018

1 reference

Isolation, purification and de novo sequencing of TBD-1, the first beta-defensin from leukocytes of reptiles.

21 January 2018

1 reference

Combining bottom-up and top-down mass spectrometric strategies for de novo sequencing of the crustacean hyperglycemic hormone from Cancer borealis

21 January 2018

1 reference

Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets

21 January 2018

1 reference

Data maximization by multipass analysis of protein mass spectra

21 January 2018

1 reference

Protein identification pipeline for the homology-driven proteomics.

21 January 2018

1 reference

Challenges and opportunities in proteomics data analysis

21 January 2018

1 reference

An algorithm for interpretation of low-energy collision-induced dissociation product ion spectra for de novo sequencing of peptides.

21 January 2018

1 reference

Sequence database searches via de novo peptide sequencing by tandem mass spectrometry

21 January 2018

1 reference

Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra

21 January 2018

1 reference

A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome

21 January 2018

1 reference

SPIDER: software for protein identification from sequence tags with de novo sequencing error.

21 January 2018

1 reference

Sequenching of peptides in a time-of-flight mass spectrometer: evaluation of postsource decay following matrix-assisted laser desorption ionisation (MALDI)

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1586/EPR.11.54

1 reference

25 August 2017

1 reference

PubMed ID

21999834