(Q37952127)

25 August 2017

Microbial systematics in the post-genomics era. (English)

1 reference

25 August 2017

0 references

Beile Gao

1

1 reference

PubMed ID

22048742

25 August 2017

Radhey S Gupta

series ordinal

2

1 reference

25 August 2017

3 November 2011

1 reference

25 August 2017

10

1 reference

based on heuristic

inferred from page(s)

published in

Antonie van Leeuwenhoek

1 reference

25 August 2017

101

1 reference

25 August 2017

1

1 reference

25 August 2017

45-54

1 reference

https://scigraph.springernature.com/pub.10.1007/s10482-011-9663-1

25 August 2017

0 references

cites work

Comparative genomics and the evolution of prokaryotes.

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Determinants of adaptive evolution at the molecular level: the extended complexity hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Enterotypes of the human gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Highways of gene sharing in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Ecosystem-specific selection pressures revealed through comparative population genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Environmental Diversity of Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Community genomics among stratified microbial assemblages in the ocean's interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Tree of life based on genome context networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Functional metagenomic profiling of nine biomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogenetic classification and the universal tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Signature genes as a phylogenomic tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Insights on biology and evolution from microbial genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Opinion: Re-evaluating prokaryotic species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Quantifying environmental adaptation of metabolic pathways in metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Horizontal gene transfer, genome innovation and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Prokaryotic evolution in light of gene transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga–Flavobacterium–Bacteroides division

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Distinctive protein signatures provide molecular markers and evidence for the monophyletic nature of the deinococcus-thermus phylum

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Molecular signatures in protein sequences that are characteristics of the phylum Aquificae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The natural evolutionary relationships among prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Evolutionary relationships among photosynthetic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The phylogeny and signature sequences characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Protein Signatures Distinctive of Alpha Proteobacteria and Its Subgroups and a Model for α –Proteobacterial Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Molecular signatures for the main phyla of photosynthetic bacteria and their subgroups

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogenomic analyses of clostridia and identification of novel protein signatures that are specific to the genus Clostridium sensu stricto (cluster I).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Critical issues in bacterial phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Chlamydiae-specific proteins and indels: novel tools for studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Signature proteins for the major clades of Cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogenomics and signature proteins for the alpha proteobacteria and its main groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Molecular signatures for the Crenarchaeota and the Thaumarchaeota

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Signature proteins that are distinctive of alpha proteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

En route to a genome-based classification of Archaea and Bacteria?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The bacterial species definition in the genomic era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Comparative genomics, minimal gene-sets and the last universal common ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Darwinian evolution in the light of genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Codon bias and base composition are poor indicators of horizontally transferred genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The balance of driving forces during genome evolution in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The net of life: reconstructing the microbial phylogenetic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The fate of new bacterial genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Rooting the tree of life using nonubiquitous genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Gene context conservation of a higher order than operons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Genome evolution in bacteria: order beneath chaos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Amelioration of bacterial genomes: rates of change and exchange

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Evolutionary origins of genomic repertoires in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Comparison of 61 sequenced Escherichia coli genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The RDP-II (Ribosomal Database Project).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Gene amelioration demonstrated: the journey of nascent genes in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Biased biological functions of horizontally transferred genes in prokaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Structural features and the persistence of acquired proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Genome-wide molecular clock and horizontal gene transfer in bacterial evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Lateral gene transfer and the nature of bacterial innovation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

21 January 2018

Bacterial pathogenomics

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Detection of lateral gene transfer among microbial genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Lateral genetic transfer: open issues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Rare genomic changes as a tool for phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Genome phylogeny based on gene content

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Genome trees and the nature of genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

The bacterial species dilemma and the genomic-phylogenetic species concept

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

A phylum level perspective on bacterial cell envelope architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Comparative genomics: the bacterial pan-genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Comparative metagenomics of microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

An invitation to the marriage of metagenomics and metabolomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Phylogeny of gammaproteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

How We Do, Don’t and Should Look at Bacteria and Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

Bioinformatics in a post-genomics age

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10482-011-9663-1

10.1007/S10482-011-9663-1

21 January 2018

Identifiers

DOI

1 reference

25 August 2017

1 reference

PubMed ID

22048742