(Q38000433)

30 June 2019

title

Complexity of RNA polymerase II elongation dynamics (English)

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30 June 2019

author

Daniel R Larson

series ordinal

2

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30 June 2019

author name string

Murali Palangat

series ordinal

1

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30 June 2019

language of work or name

English

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publication date

28 March 2012

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30 June 2019

Biochimica et Biophysica Acta

published in

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30 June 2019

volume

1819

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30 June 2019

issue

7

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30 June 2019

page(s)

667-672

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30 June 2019

NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation

cites work

1 reference

12 December 2020

Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II.

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A highly purified RNA polymerase II elongation control system

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Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

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Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae.

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FACT facilitates transcription-dependent nucleosome alteration

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Transcription elongation factors repress transcription initiation from cryptic sites.

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Elongation factor-dependent transcript shortening by template-engaged RNA polymerase II.

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Mechanistic studies of transcription arrest at the adenovirus major late attenuation site. Comparison of purified RNA polymerase II and washed elongation complexes

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The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII

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12 December 2020

Combinatorial Control of Human RNA Polymerase II (RNAP II) Pausing and Transcript Cleavage by Transcription Factor IIF, Hepatitis δ Antigen, and Stimulatory Factor II

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12 December 2020

A slow RNA polymerase II affects alternative splicing in vivo

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12 December 2020

The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo

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12 December 2020

Sequence-dependent kinetic model for transcription elongation by RNA polymerase

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12 December 2020

A Ratchet Mechanism of Transcription Elongation and Its Control

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12 December 2020

Nature of the nucleosomal barrier to RNA polymerase II

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12 December 2020

A negative elongation factor for human RNA polymerase II inhibits the anti-arrest transcript-cleavage factor TFIIS.

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12 December 2020

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

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12 December 2020

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

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12 December 2020

The human SWI/SNF subunit Brm is a regulator of alternative splicing

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12 December 2020

Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation

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12 December 2020

A high-resolution map of transcription in the yeast genome

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12 December 2020

The assembly and maintenance of heterochromatin initiated by transgene repeats are independent of the RNA interference pathway in mammalian cells

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12 December 2020

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

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12 December 2020

Cloning, expression and characterization of the human transcription elongation factor, TFIIS

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12 December 2020

Transcriptional noise and the fidelity of initiation by RNA polymerase II.

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12 December 2020

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner

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12 December 2020

RNA maps reveal new RNA classes and a possible function for pervasive transcription

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12 December 2020

Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription

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12 December 2020

The transcriptional cycle of HIV-1 in real-time and live cells.

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Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36.

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12 December 2020

Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

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12 December 2020

The antisense transcriptomes of human cells

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12 December 2020

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

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12 December 2020

Bidirectional promoters generate pervasive transcription in yeast

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12 December 2020

DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation.

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12 December 2020

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

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12 December 2020

Rates of in situ transcription and splicing in large human genes

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12 December 2020

A wave of nascent transcription on activated human genes

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12 December 2020

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

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12 December 2020

Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

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12 December 2020

Transcript Elongation by RNA Polymerase II.

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12 December 2020

An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo

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12 December 2020

Single-allele analysis of transcription kinetics in living mammalian cells

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12 December 2020

BRG1 helps RNA polymerase II to overcome a nucleosomal barrier during elongation, in vivo

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12 December 2020

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

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12 December 2020

Splicing-dependent RNA polymerase pausing in yeast

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12 December 2020

Efficient and rapid nucleosome traversal by RNA polymerase II depends on a combination of transcript elongation factors

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12 December 2020

Nascent transcript sequencing visualizes transcription at nucleotide resolution

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12 December 2020

The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing

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12 December 2020

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila

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12 December 2020

Nuclear physics: quantitative single-cell approaches to nuclear organization and gene expression

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12 December 2020

Real-time observation of transcription initiation and elongation on an endogenous yeast gene

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12 December 2020

Uniform distribution of elongating RNA polymerase II complexes in transcribed gene locus

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12 December 2020

Real-time imaging of cotranscriptional splicing reveals a kinetic model that reduces noise: implications for alternative splicing regulation

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12 December 2020

Histone occupancy in vivo at the 601 nucleosome binding element is determined by transcriptional history

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12 December 2020

Spliceosome assembly is coupled to RNA polymerase II dynamics at the 3' end of human genes

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12 December 2020

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

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12 December 2020

Fast transcription rates of RNA polymerase II in human cells

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12 December 2020

Modelling reveals kinetic advantages of co-transcriptional splicing

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12 December 2020

The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes.

1 reference

12 December 2020

RNA polymerase II transcription factor SIII. II. Functional properties and role in RNA chain elongation

1 reference

12 December 2020

Roles for both the RAP30 and RAP74 subunits of transcription factor IIF in transcription initiation and elongation by RNA polymerase II

1 reference

12 December 2020

Transcriptional pausing, arrest, and readthrough at the adenovirus major late attenuation site

1 reference

12 December 2020

An RNA polymerase II elongation factor encoded by the human ELL gene

1 reference

12 December 2020

Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase

1 reference

12 December 2020

A model for the mechanism of polymerase translocation

1 reference

12 December 2020

Structure and function of RNA polymerase II elongation factor ELL. Identification of two overlapping ELL functional domains that govern its interaction with polymerase and the ternary elongation complex

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12 December 2020

FACT, a factor that facilitates transcript elongation through nucleosomes

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12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

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12 December 2020

Visualization of single RNA transcripts in situ

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12 December 2020

Transcriptional pausing at +62 of the HIV-1 nascent RNA modulates formation of the TAR RNA structure

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12 December 2020

Localization of ASH1 mRNA particles in living yeast

1 reference

12 December 2020

Purification of a factor from Ehrlich ascites tumor cells specifically stimulating RNA polymerase II

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12 December 2020

10.1016/J.BBAGRM.2012.02.024

Identifiers

DOI

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30 June 2019

PMC publication ID

6310610

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30 June 2019

PubMed publication ID

22480952

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30 June 2019