(Q38020621)

27 August 2017

title

Initiation of HIV-1 reverse transcription and functional role of nucleocapsid-mediated tRNA/viral genome interactions (English)

1 reference

27 August 2017

1 reference

Pierre Barraud

3

0 references

Carine Tisné

Carine Tisné

6

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Jean-Christophe Paillart

Jean-Christophe Paillart

5

0 references

Roland Marquet

Roland Marquet

4

0 references

Dona Sleiman

1

Dona Sleiman

1 reference

27 August 2017

2

Valérie Goldschmidt

1 reference

27 August 2017

publication date

18 June 2012

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27 August 2017

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27 August 2017

volume

169

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27 August 2017

issue

2

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27 August 2017

page(s)

324-339

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Forced selection of a human immunodeficiency virus type 1 variant that uses a non-self tRNA primer for reverse transcription: involvement of viral RNA sequences and the reverse transcriptase enzyme

27 August 2017

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Dynamic binding orientations direct activity of HIV reverse transcriptase

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HIV-1 DNA Flap formation promotes uncoating of the pre-integration complex at the nuclear pore

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Restoration of tRNA3Lys-primed(-)-strand DNA synthesis to an HIV-1 reverse transcriptase mutant with extended tRNAs. Implications for retroviral replication

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Interaction of retroviral reverse transcriptase with template-primer duplexes during replication.

7 January 2021

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New insights into the formation of HIV-1 reverse transcription initiation complex

7 January 2021

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Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

7 January 2021

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Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC

7 January 2021

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Switching the in vitro tRNA usage of HIV-1 by simultaneous adaptation of the PBS and PAS.

7 January 2021

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The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription

7 January 2021

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Initiation of HIV-1 reverse transcription is regulated by a primer activation signal

7 January 2021

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Molecular analysis of the second template switch during reverse transcription of the HIV RNA template

7 January 2021

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The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop

7 January 2021

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In vitro evidence that the untranslated leader of the HIV-1 genome is an RNA checkpoint that regulates multiple functions through conformational changes

7 January 2021

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Secondary structure of the HIV-2 leader RNA comprising the tRNA-primer binding site

7 January 2021

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The leader of the HIV-1 RNA genome forms a compactly folded tertiary structure

7 January 2021

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How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription

7 January 2021

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A nucleoprotein complex mediates the integration of retroviral DNA.

7 January 2021

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The stoichiometry of Gag protein in HIV-1.

7 January 2021

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Structural organization of authentic, mature HIV-1 virions and cores

7 January 2021

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Structural and functional properties of the HIV-1 RNA-tRNA(Lys)3 primer complex annealed by the nucleocapsid protein: comparison with the heat-annealed complex

7 January 2021

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Structural insights into the retroviral DNA integration apparatus.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Proteomic and biochemical analysis of purified human immunodeficiency virus type 1 produced from infected monocyte-derived macrophages

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

RNA structure and packaging signals in the 5' leader region of the human immunodeficiency virus type 1 genome

7 January 2021

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Nucleic acid binding and chaperone properties of HIV-1 Gag and nucleocapsid proteins

7 January 2021

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Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Flexible nature and specific functions of the HIV-1 nucleocapsid protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Alternative tRNA priming of human immunodeficiency virus type 1 reverse transcription explains sequence variation in the primer-binding site that has been attributed to APOBEC3G activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structural investigation of HIV-1 genomic RNA dimerization process reveals a role for the Major Splice-site Donor stem loop.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Probing the importance of tRNA anticodon: human immunodeficiency virus type 1 (HIV-1) RNA genome complementarity with an HIV-1 that selects tRNA(Glu) for replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Characterization of intracellular reverse transcription complexes of human immunodeficiency virus type 1.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

HIV-1: fifteen proteins and an RNA

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Initiation of HIV-2 reverse transcription: a secondary structure model of the RNA-tRNA(Lys3) duplex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Does the HIV-1 primer activation signal interact with tRNA3(Lys) during the initiation of reverse transcription?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structural variability of the initiation complex of HIV-1 reverse transcription.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Point mutants of Moloney murine leukemia virus that fail to package viral RNA: evidence for specific RNA recognition by a "zinc finger-like" protein sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

HIV-1 reverse transcription: a brief overview focused on structure-function relationships among molecules involved in initiation of the reaction

7 January 2021

1 reference

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Retroviral nucleocapsid protein-metal ion interactions: folding and sequence variants

7 January 2021

1 reference

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Roles of Gag and NCp7 in facilitating tRNA(Lys)(3) Annealing to viral RNA in human immunodeficiency virus type 1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Mechanistic insights into the kinetics of HIV-1 nucleocapsid protein-facilitated tRNA annealing to the primer binding site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

HIV-1 nucleocapsid protein zinc finger structures induce tRNA(Lys,3) structural changes but are not critical for primer/template annealing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Tat is required for efficient HIV-1 reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Identification of a minimal region of the HIV-1 5'-leader required for RNA dimerization, NC binding, and packaging

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Retroviral reverse transcriptases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

APOBEC3F can inhibit the accumulation of HIV-1 reverse transcription products in the absence of hypermutation. Comparisons with APOBEC3G

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

On the importance of the primer activation signal for initiation of tRNA(lys3)-primed reverse transcription of the HIV-1 RNA genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Initiation of HIV Reverse Transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Mutational analysis of the tRNA3Lys/HIV-1 RNA (primer/template) complex.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structural basis for the specificity of the initiation of HIV-1 reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Efficient initiation of HIV-1 reverse transcription in vitro. Requirement for RNA sequences downstream of the primer binding site abrogated by nucleocapsid protein-dependent primer-template interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Identification of a human immunodeficiency virus type 1 that stably uses tRNALys1,2 rather than tRNALys,3 for initiation of reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Reverse transcriptase of human immunodeficiency virus can use either human tRNA(3Lys) or Escherichia coli tRNA(2Gln) as a primer in an in vitro primer-utilization assay

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structural and functional evidence that initiation and elongation of HIV-1 reverse transcription are distinct processes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Contacts between Reverse Transcriptase and the Primer Strand Govern the Transition from Initiation to Elongation of HIV-1 Reverse Transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

"In the beginning": initiation of minus strand DNA synthesis in retroviruses and LTR-containing retrotransposons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Dynamical behavior of the HIV-1 nucleocapsid protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

A set of BEST triple-resonance experiments for time-optimized protein resonance assignment.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Initiation complex dynamics direct the transitions between distinct phases of early HIV reverse transcription.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Nucleotides within the anticodon stem are important for optimal use of tRNA(Lys,3) as the primer for HIV-1 reverse transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Binding of the HIV-1 nucleocapsid protein to the primer tRNA(3Lys), in vitro, is essentially not specific

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structure of the complex between the HIV-1 nucleocapsid protein NCp7 and the single-stranded pentanucleotide d(ACGCC)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

When is it time for reverse transcription to start and go?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

NCp7 activates HIV-1Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Flexibility in the P2 domain of the HIV-1 Gag polyprotein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

The availability of the primer activation signal (PAS) affects the efficiency of HIV-1 reverse transcription initiation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

First snapshots of the HIV-1 RNA structure in infected cells and in virions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Dimerization of retroviral RNA genomes: an inseparable pair.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Recombinant HIV-1 nucleocapsid protein accelerates HIV-1 reverse transcriptase catalyzed DNA strand transfer reactions and modulates RNase H activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Elevated levels of mRNA can account for the trans-activation of human immunodeficiency virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Secondary structure of the HIV reverse transcription initiation complex by NMR.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structure-function relationships of the initiation complex of HIV-1 reverse transcription: the case of mutant viruses using tRNAHis as primer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

The contribution of the primer activation signal to differences between Gag- and NCp7-facilitated tRNA(Lys3) annealing in HIV-1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Speeding up three-dimensional protein NMR experiments to a few minutes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Affinities of packaging domain loops in HIV-1 RNA for the nucleocapsid protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

C-terminal retroviral-type zinc finger domain from the HIV-1 nucleocapsid protein is structurally similar to the N-terminal zinc finger domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution‐state structure of the nucleocapsid protein from HIV‐1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Human immunodeficiency virus type 1 reverse transcriptase: enhancement of activity by interaction with cellular topoisomerase I.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Functional association of cyclophilin A with HIV-1 virions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Structural bases of the annealing of primer tRNA(3Lys) to the HIV-1 viral RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

The annealing mechanism of HIV-1 reverse transcription primer onto the viral genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Identification of critical amino acid residues in human immunodeficiency virus type 1 IN required for efficient proviral DNA formation at steps prior to integration in dividing and nondividing cells.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Binding properties of the human immunodeficiency virus type 1 nucleocapsid protein p7 to a model RNA: elucidation of the structural determinants for function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: a fluorescence study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Architecture and secondary structure of an entire HIV-1 RNA genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Refined model for primer/template binding by HIV-1 reverse transcriptase: pre-steady-state kinetic analyses of primer/template binding and nucleotide incorporation events distinguish between different binding modes depending on the nature of the nuc

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

The gag precursor contains a specific HIV-1 protease cleavage site between the NC (P7) and P1 proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Trimethylguanosine capping selectively promotes expression of Rev-dependent HIV-1 RNAs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Primer Selection by HIV-1 Reverse Transcriptase on RNA – tRNA3Lysand DNA – tRNA3LysHybrids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Nucleotide sequences within the U5 region of the viral RNA genome are the major determinants for an human immunodeficiency virus type 1 to maintain a primer binding site complementary to tRNA(His).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Requirement for integrase during reverse transcription of human immunodeficiency virus type 1 and the effect of cysteine mutations of integrase on its interactions with reverse transcriptase.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

Nef stimulates human immunodeficiency virus type 1 proviral DNA synthesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

7 January 2021

The two zinc fingers in the human immunodeficiency virus type 1 nucleocapsid protein are not functionally equivalent

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

7 January 2021

Human immunodeficiency virus type 1 can use different tRNAs as primers for reverse transcription but selectively maintains a primer binding site complementary to tRNA(3Lys)

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

7 January 2021

Primer tRNAs for reverse transcription

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2012.06.006

7 January 2021

10.1016/J.VIRUSRES.2012.06.006

Identifiers

DOI

1 reference

27 August 2017

1 reference