(Q38067568)

28 August 2017

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title

RNase E: at the interface of bacterial RNA processing and decay (English)

1 reference

28 August 2017

George A Mackie

1

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PubMed ID

23241849

28 August 2017

language of work or name

English

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publication date

1 January 2013

1 reference

Nature Reviews Microbiology

28 August 2017

1 reference

28 August 2017

11

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28 August 2017

1

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28 August 2017

45-57

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https://scigraph.springernature.com/pub.10.1038/nrmicro2930

28 August 2017

0 references

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The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R.

31 March 2020

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An important role for RNase R in mRNA decay

31 March 2020

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Of proteins and RNA: the RNase P/MRP family

31 March 2020

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Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA.

31 March 2020

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Oligoribonuclease is an essential component of the mRNA decay pathway

31 March 2020

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Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli

31 March 2020

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Processing enzyme ribonuclease E specifically cleaves RNA I. An inhibitor of primer formation in plasmid DNA synthesis

31 March 2020

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RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

31 March 2020

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RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors

31 March 2020

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RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

31 March 2020

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Single amino acid changes in the predicted RNase H domain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants

31 March 2020

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Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

31 March 2020

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A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

31 March 2020

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Proteins associated with RNase E in a multicomponent ribonucleolytic complex

31 March 2020

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31 March 2020

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The Crystal Structure of the Escherichia coli RNase E Apoprotein and a Mechanism for RNA Degradation

31 March 2020

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Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E.

31 March 2020

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Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity

31 March 2020

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Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain.

31 March 2020

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RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton

31 March 2020

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RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome

31 March 2020

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"Zn-link": a metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E.

31 March 2020

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Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA

31 March 2020

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Ribonuclease E is a 5'-end-dependent endonuclease

31 March 2020

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The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

31 March 2020

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Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis

31 March 2020

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Sensing of 5' monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo

31 March 2020

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Substrate binding and active site residues in RNases E and G: role of the 5'-sensor

31 March 2020

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Structural insights into the dual activity of RNase J

31 March 2020

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Unusual, dual endo- and exonuclease activity in the degradosome explained by crystal structure analysis of RNase J1

31 March 2020

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Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein

31 March 2020

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Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2

31 March 2020

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Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2930

The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2930

Roles of the 5'-phosphate sensor domain in RNase E.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2930

RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Function, mechanism and regulation of bacterial ribonucleases

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2930

Bacteriophage T4 polynucleotide kinase triggers degradation of mRNAs

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2930

Post-transcriptional control of Crp-cAMP by RNase LS in Escherichia coli

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2930

Characterization of an Escherichia coli elaC deletion mutant.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

RNase Z in Escherichia coli plays a significant role in mRNA decay.

31 March 2020

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Control of RNase E-mediated RNA degradation by 5'-terminal base pairing in E. coli

31 March 2020

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A 5'-terminal stem-loop structure can stabilize mRNA in Escherichia coli

31 March 2020

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Ectopic RNase E sites promote bypass of 5'-end-dependent mRNA decay in Escherichia coli.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO2930

In the absence of translation, RNase E can bypass 5' mRNA stabilizers in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Mutants of the RNA-processing enzyme RNase E reverse the extreme slow-growth phenotype caused by a mutant translation factor EF-Tu.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The role of RNA structure in determining RNase E-dependent cleavage sites in the mRNA for ribosomal protein S20 in vitro

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Hfq and its constellation of RNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Complementary sequences 1700 nucleotides apart form a ribonuclease III cleavage site in Escherichia coli ribosomal precursor RNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Functional relationship between Escherichia coli RNase E and the CafA protein.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Action of RNase II and polynucleotide phosphorylase against RNAs containing stem-loops of defined structure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Lost in translation: the influence of ribosomes on bacterial mRNA decay

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Control of functional mRNA stability in bacteria: multiple mechanisms of nucleolytic and non-nucleolytic inactivation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: functional replacement of RhlB by RhlE.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Molecular recognition betweenEscherichia colienolase and ribonuclease E

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Recognition of enolase in the Escherichia coli RNA degradosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Crystal Structure of Escherichia coli Polynucleotide Phosphorylase Core Bound to RNase E, RNA and Manganese: Implications for Catalytic Mechanism and RNA Degradosome Assembly

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Recognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase E.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Location of the RNA-processing enzymes RNase III, RNase E and RNase P in the Escherichia coli cell.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Poly(A) polymerase I of Escherichia coli: characterization of the catalytic domain, an RNA binding site and regions for the interaction with proteins involved in mRNA degradation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Polyphosphate kinase is a component of the Escherichia coli RNA degradosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Unraveling new roles for minor components of the E. coli RNA degradosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Consequences of RNase E scarcity in Escherichia coli.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

RNase E autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5' untranslated region

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Regulation of RraA, a protein inhibitor of RNase E-mediated RNA decay

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Regulatory RNAs in bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Regulation by small RNAs in bacteria: expanding frontiers

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The helical MreB cytoskeleton in Escherichia coli MC1000/pLE7 is an artifact of the N-Terminal yellow fluorescent protein tag

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Spatial organization of the flow of genetic information in bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Involvement of the Escherichia coli endoribonucleases G and E in the secondary processing of RegB-cleaved transcripts of bacteriophage T4.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The phylogenetic distribution of bacterial ribonucleases.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

A phylogenetic view of bacterial ribonucleases

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Maturation and degradation of RNA in bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Exoribonuclease and endoribonuclease activities of RNase BN/RNase Z both function in vivo

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2930

Escherichia coli RNase M is a multiply altered form of RNase I

31 March 2020

1 reference

12 December 2020

RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E.

1 reference

12 December 2020

Processing of unstable bacteriophage T4 gene 32 mRNAs into a stable species requires Escherichia coli ribonuclease E.

1 reference

12 December 2020

The RNase E of Escherichia coli is a membrane-binding protein

1 reference

12 December 2020

Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli

1 reference

12 December 2020

Secondary structure of the mRNA for ribosomal protein S20. Implications for cleavage by ribonuclease E

1 reference

12 December 2020

An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression

1 reference

12 December 2020

RNase E, an RNA processing enzyme from Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO2930

1 reference

PubMed ID

23241849

Dimensions Publication ID

28 August 2017

0 references

1 reference

PubMed ID

23241849