(Q54350092)

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Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination.

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scholarly article

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Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination. (English)

1 reference

Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

Escherichia coli

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author name string

K Anupama

1

1 reference

Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

J Krishna Leela

2

1 reference

Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

J Gowrishankar

3

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Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

language of work or name

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publication date

8 November 2011

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Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

Molecular Microbiology

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Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

82

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Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

6

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Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

1330-1348

1 reference

Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

Control of Transcription Termination

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Mutational analysis of repression and activation of the tyrP gene in Escherichia coli

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Processing of bacterial RNA

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The critical role of RNA processing and degradation in the control of gene expression.

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Hypernegative supercoiling inhibits growth by causing RNA degradation

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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

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Ectopic RNase E sites promote bypass of 5'-end-dependent mRNA decay in Escherichia coli.

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Screening for synthetic lethal mutants in Escherichia coli and identification of EnvC (YibP) as a periplasmic septal ring factor with murein hydrolase activity.

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Global analysis of Escherichia coli RNA degradosome function using DNA microarrays

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The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo

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Towards single-copy gene expression systems making gene cloning physiologically relevant: lambda InCh, a simple Escherichia coli plasmid-chromosome shuttle system

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A NusE:NusG complex links transcription and translation

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Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover.

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Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli

1 reference

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Bacteriophage T4 UvsW protein is a helicase involved in recombination, repair and the regulation of DNA replication origins

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The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.

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Endonucleolytic initiation of mRNA decay in Escherichia coli

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Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal

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Transcription termination defective mutants of Rho: role of different functions of Rho in releasing RNA from the elongation complex

1 reference

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Interaction surface of the transcription terminator Rho required to form a complex with the C-terminal domain of the antiterminator NusG.

1 reference

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21 January 2018

Single amino acid changes in the predicted RNase H domain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants

1 reference

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Maturation and degradation of RNA in bacteria

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

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Lost in translation: the influence of ribosomes on bacterial mRNA decay

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The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.

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Degradation of RNA in bacteria: comparison of mRNA and stable RNA

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Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.

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Killer and protective ribosomes

1 reference

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Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology

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UvsW protein regulates bacteriophage T4 origin-dependent replication by unwinding R-loops

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Linking RNA polymerase backtracking to genome instability in E. coli

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Unpaired terminal nucleotides and 5' monophosphorylation govern 3' polyadenylation by Escherichia coli poly(A) polymerase I.

1 reference

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21 January 2018

Roles of the 5'-phosphate sensor domain in RNase E.

1 reference

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Substrate binding and active site residues in RNases E and G: role of the 5'-sensor

1 reference

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21 January 2018

Why is transcription coupled to translation in bacteria?

1 reference

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A general and fast method for mapping mutations on the Escherichia coli chromosome

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An mRNA degrading complex in Rhodobacter capsulatus.

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RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity.

1 reference

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21 January 2018

Consequences of RNase E scarcity in Escherichia coli.

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Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis

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Composition and conservation of the mRNA-degrading machinery in bacteria

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A bacterial transcription terminator with inefficient molecular motor action but with a robust transcription termination function

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Crystallographic and NMR analyses of UvsW and UvsW.1 from bacteriophage T4

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Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter

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Rapid cleavage of RNA by RNase E in the absence of 5' monophosphate stimulation

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The Crystal Structure of the Escherichia coli RNase E Apoprotein and a Mechanism for RNA Degradation

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Initiation of bacteriophage T4 DNA replication and replication fork dynamics: a review in the Virology Journal series on bacteriophage T4 and its relatives

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RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

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Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA.

1 reference

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21 January 2018

RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors

1 reference

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RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

1 reference

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The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo

1 reference

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Ribonuclease E is a 5'-end-dependent endonuclease

1 reference

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Structure and Biological Function of the RNA Pyrophosphohydrolase BdRppH from Bdellovibrio bacteriovorus

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Analysis of RNA decay, processing, and polyadenylation in Escherichia coli and other prokaryotes

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The T4 phage UvsW protein contains both DNA unwinding and strand annealing activities.

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21 January 2018

Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2011.07895.X

21 January 2018

RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E.

1 reference

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Intragenic suppressors of temperature-sensitive rne mutations lead to the dissociation of RNase E activity on mRNA and tRNA substrates in Escherichia coli

1 reference

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Rho directs widespread termination of intragenic and stable RNA transcription.

1 reference

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Bacterial transcription terminators: the RNA 3'-end chronicles

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Emergent properties of reduced-genome Escherichia coli.

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Cooperation between translating ribosomes and RNA polymerase in transcription elongation

1 reference

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Rho-dependent termination and ATPases in transcript termination

1 reference

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RNA polymerase elongation factors

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RecG protein and single-strand DNA exonucleases avoid cell lethality associated with PriA helicase activity in Escherichia coli

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Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins

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Compromised factor-dependent transcription termination in a nusA mutant of Escherichia coli: spectrum of termination efficiencies generated by perturbations of Rho, NusG, NusA, and H-NS family proteins

1 reference

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RNase E autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5' untranslated region

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Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli

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Effects on mRNA degradation by Escherichia coli transcription termination factor Rho and pBR322 copy number control protein Rop.

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Identification of Bdellovibrio bacteriovorus HD100 Bd0714 as a Nudix dGTPase

1 reference

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A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells.

1 reference

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RNase E maintenance of proper FtsZ/FtsA ratio required for nonfilamentous growth of Escherichia coli cells but not for colony-forming ability

1 reference

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The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

1 reference

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21 January 2018

High-frequency generalised transduction by bacteriophage T4.

1 reference

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The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates

1 reference

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21 January 2018

Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates

1 reference

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21 January 2018

Identifiers

10.1111/J.1365-2958.2011.07895.X

1 reference

Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

1 reference

Europe PubMed Central

28 May 2018

http://europepmc.org/abstract/MED/22026368

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