(Q38141903)

29 August 2017

Principal component analysis: a method for determining the essential dynamics of proteins (English)

1 reference

principal component analysis

29 August 2017

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author name string

Charles C David

series ordinal

1

1 reference

29 August 2017

Donald J Jacobs

series ordinal

2

1 reference

29 August 2017

language of work or name

English

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publication date

1 January 2014

1 reference

Methods in Molecular Biology

29 August 2017

1 reference

29 August 2017

1084

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29 August 2017

193-226

1 reference

Switch II mutants reveal coupling between the nucleotide- and actin-binding regions in myosin V.

29 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Fast and robust fixed-point algorithms for independent component analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Anisotropy of fluctuation dynamics of proteins with an elastic network model

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Independent component analysis: algorithms and applications

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Collective protein dynamics in relation to function

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Investigating protein dynamics in collective coordinate space

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Essential dynamics of proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

An analysis of core deformations in protein superfamilies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Characterizing protein motions from structure

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Kinetics and thermodynamics of the rate-limiting conformational change in the actomyosin V mechanochemical cycle

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Close correspondence between the motions from principal component analysis of multiple HIV-1 protease structures and elastic network modes

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Conformational change of proteins arising from normal mode calculations

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

An efficient method for sampling the essential subspace of proteins.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Constrained geometric simulation of diffusive motion in proteins

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Convergence of sampling in protein simulations.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Protein flexibility predictions using graph theory

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

3 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4676806

Generating stereochemically acceptable protein pathways

3 December 2018

1 reference

12 December 2020

A Study Of A Measure Of Sampling Adequacy For Factor-Analytic Correlation Matrices

1 reference

12 December 2020

A Comprehensive Trial Of The Scree And Kg Criteria For Determining The Number Of Factors

1 reference

12 December 2020

The Scree Test For The Number Of Factors

1 reference

12 December 2020

Harmonicity and anharmonicity in protein dynamics: a normal mode analysis and principal component analysis

1 reference

12 December 2020

10.1007/978-1-62703-658-0_11

Identifiers

DOI

1 reference

29 August 2017

1 reference

29 August 2017

PubMed publication ID

24061923

1 reference