(Q38155468)

English

Beyond standard molecular dynamics: investigating the molecular mechanisms of G protein-coupled receptors with enhanced molecular dynamics methods.

scientific article published on January 2014

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24158803%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Beyond standard molecular dynamics: investigating the molecular mechanisms of G protein-coupled receptors with enhanced molecular dynamics methods (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24158803%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

G protein-coupled receptor

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2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24158803%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

author name string

Jennifer M Johnston

1

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28 February 2020

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1 January 2014

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28 February 2020

Advances in Experimental Medicine and Biology

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28 February 2020

796

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28 February 2020

95-125

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24158803%20AND%20SRC:MED&resulttype=core&format=json

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Electron crystallography reveals the structure of metarhodopsin I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

14 September 2017

Dynamics of beta2-adrenergic receptor-ligand complexes on living cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

14 September 2017

Statistical mechanical equilibrium theory of selective ion channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

14 September 2017

Beta2 adrenergic receptor activation. Modulation of the proline kink in transmembrane 6 by a rotamer toggle switch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

28 September 2017

Non-competitive antagonism of beta(2)-agonist-mediated cyclic AMP accumulation by ICI 118551 in BC3H1 cells endogenously expressing constitutively active beta(2)-adrenoceptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

28 September 2017

Mutagenesis of a single amino acid in the rat mu-opioid receptor discriminates ligand binding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

28 September 2017

Rhodopsin forms a dimer with cytoplasmic helix 8 contacts in native membranes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

23 June 2018

Lessons from free energy simulations of delta-opioid receptor homodimers involving the fourth transmembrane helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

23 June 2018

A conserved aromatic lock for the tryptophan rotameric switch in TM-VI of seven-transmembrane receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

23 June 2018

Key residues defining the mu-opioid receptor binding pocket: a site-directed mutagenesis study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

23 June 2018

Lateral diffusion of rhodopsin in the visual receptor membrane

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

23 June 2018

Protein rotational diffusion and lipid/protein interactions in recombinants of bovine rhodopsin with saturated diacylphosphatidylcholines of different chain lengths studied by conventional and saturation-transfer electron spin resonance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

23 June 2018

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Modeling GPCR active state conformations: the β(2)-adrenergic receptor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Ligand entry and exit pathways in the beta2-adrenergic receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Expanding GPCR homology model binding sites via a balloon potential: A molecular dynamics refinement approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Protein-protein docking with backbone flexibility.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Chromophore channeling in the G-protein coupled receptor rhodopsin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

From A to B in free energy space.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Efficient reconstruction of complex free energy landscapes by multiple walkers metadynamics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Generalized born model with a simple smoothing function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

ASP147 in the third transmembrane helix of the rat mu opioid receptor forms ion-pairing with morphine and naltrexone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Naloxone activation of mu-opioid receptors mutated at a histidine residue lining the opioid binding cavity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Role of aromatic transmembrane residues of the delta-opioid receptor in ligand recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4074508

31 August 2018

Internal trafficking and surface mobility of a functionally intact beta2-adrenergic receptor-green fluorescent protein conjugate

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron and W. F. van Gunsteren, Phys. Chem. Chem. Phys., 2009, 11, 1934

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bioluminescence resonance energy transfer as a screening assay: Focus on partial and inverse agonism

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeted molecular dynamics: a new approach for searching pathways of conformational transitions

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of two serine residues involved in agonist activation of the beta-adrenergic receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spin-label saturation-transfer electron spin resonance detection of transient association of rhodopsin in reconstituted membranes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conserved aspartic acid residues 79 and 113 of the beta-adrenergic receptor have different roles in receptor function

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

G Protein-Coupled Receptors Self-Assemble in Dynamics Simulations of Model Bilayers

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling and active site refinement for G protein-coupled receptors: application to the beta-2 adrenergic receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rhodopsin dimers in native disc membranes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24158803

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/978-94-007-7423-0_6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24158803%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

release_fvwomhnyxzga7n2ybj2gyokzna

1 reference

https://api.fatcat.wiki/v0/release/fvwomhnyxzga7n2ybj2gyokzna

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24158803%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24158803%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

ResearchGate publication ID

0 references

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