(Q38255571)

1 September 2017

1 reference

title

Boolean modeling: a logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions (English)

1 reference

1 September 2017

Réka Albert

1

0 references

author name string

Juilee Thakar

series ordinal

2

1 reference

1 September 2017

publication date

1 September 2014

1 reference

Wiley interdisciplinary reviews. Systems biology and medicine

1 September 2017

number of pages

17

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

1 September 2017

volume

6

1 reference

1 September 2017

issue

5

1 reference

1 September 2017

page(s)

353-369

1 reference

Reconstruction of cellular signalling networks and analysis of their properties

1 September 2017

cites work

1 reference

The edges of understanding

21 January 2018

1 reference

Statistical mechanics of complex networks

21 January 2018

1 reference

Network modeling of signal transduction: establishing the global view

21 January 2018

1 reference

Modelling and analysis of gene regulatory networks

21 January 2018

1 reference

Protein interaction networks

21 January 2018

1 reference

Metabolic stability and epigenesis in randomly constructed genetic nets

21 January 2018

1 reference

Boolean formalization of genetic control circuits.

21 January 2018

1 reference

Methods of robustness analysis for Boolean models of gene control networks.

21 January 2018

1 reference

A Boolean model of the gene regulatory network underlying Mammalian cortical area development

21 January 2018

1 reference

Exploring phospholipase C-coupled Ca(2+) signalling networks using Boolean modelling.

21 January 2018

1 reference

A logical model provides insights into T cell receptor signaling

21 January 2018

1 reference

Modeling systems-level regulation of host immune responses

21 January 2018

1 reference

Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth.

21 January 2018

1 reference

Computational and experimental analysis reveals a requirement for eosinophil-derived IL-13 for the development of allergic airway responses in C57BL/6 mice.

21 January 2018

1 reference

A network model for plant-pollinator community assembly

21 January 2018

1 reference

Boolean network model predicts cell cycle sequence of fission yeast

21 January 2018

1 reference

The yeast cell-cycle network is robustly designed

21 January 2018

1 reference

Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae

21 January 2018

1 reference

Genetic regulation of root hair development in Arabidopsis thaliana: a network model.

21 January 2018

1 reference

Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling

21 January 2018

1 reference

Digital clocks: simple Boolean models can quantitatively describe circadian systems

21 January 2018

1 reference

Studying the effect of cell division on expression patterns of the segment polarity genes

21 January 2018

1 reference

Network model of survival signaling in large granular lymphocyte leukemia

21 January 2018

1 reference

Dynamical and structural analysis of a T cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia

21 January 2018

1 reference

Integration of Boolean models exemplified on hepatocyte signal transduction.

21 January 2018

1 reference

Attractor landscape analysis reveals feedback loops in the p53 network that control the cellular response to DNA damage

21 January 2018

1 reference

Systems biology--biomedical modeling

21 January 2018

1 reference

Physicochemical modelling of cell signalling pathways.

21 January 2018

1 reference

Fuzzy logic analysis of kinase pathway crosstalk in TNF/EGF/insulin-induced signaling

21 January 2018

1 reference

Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli

21 January 2018

1 reference

Petri net modelling of biological networks

21 January 2018

1 reference

The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks

21 January 2018

1 reference

The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data

21 January 2018

1 reference

ON/OFF and beyond--a boolean model of apoptosis

21 January 2018

1 reference

The transition from differential equations to Boolean networks: a case study in simplifying a regulatory network model

21 January 2018

1 reference

The segment polarity network is a robust developmental module

21 January 2018

1 reference

Attractor analysis of asynchronous Boolean models of signal transduction networks

21 January 2018

1 reference

Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell

21 January 2018

1 reference

The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster

21 January 2018

1 reference

A robust model to describe the differentiation of T-helper cells.

21 January 2018

1 reference

Molecular and functional profiling of memory CD8 T cell differentiation.

21 January 2018

1 reference

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET

21 January 2018

1 reference

Discrete dynamic modeling with asynchronous update, or how to model complex systems in the absence of quantitative information

21 January 2018

1 reference

A novel method for signal transduction network inference from indirect experimental evidence.

21 January 2018

1 reference

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

21 January 2018

1 reference

Using Bayesian networks to analyze expression data

21 January 2018

1 reference

Inferring genetic networks and identifying compound mode of action via expression profiling

21 January 2018

1 reference

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

21 January 2018

1 reference

Inferring gene networks from time series microarray data using dynamic Bayesian networks

21 January 2018

1 reference

NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks.

21 January 2018

1 reference

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

Cytoscape 2.8: new features for data integration and network visualization

21 January 2018

1 reference

Structural and functional analysis of cellular networks with CellNetAnalyzer

21 January 2018

1 reference

A methodology for the structural and functional analysis of signaling and regulatory networks

21 January 2018

1 reference

Genomic analysis of regulatory network dynamics reveals large topological changes

21 January 2018

1 reference

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

21 January 2018

1 reference

Relating three-dimensional structures to protein networks provides evolutionary insights

21 January 2018

1 reference

Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach

21 January 2018

1 reference

The transcriptional regulatory network of Mycobacterium tuberculosis

21 January 2018

1 reference

The connectivity structure, giant strong component and centrality of metabolic networks

21 January 2018

1 reference

Formation of regulatory patterns during signal propagation in a Mammalian cellular network

21 January 2018

1 reference

Network motifs: simple building blocks of complex networks

21 January 2018

1 reference

Network motifs in the transcriptional regulation network of Escherichia coli

21 January 2018

1 reference

The effect of negative feedback loops on the dynamics of boolean networks

21 January 2018

1 reference

Boolean network models of cellular regulation: prospects and limitations

21 January 2018

1 reference

An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data

21 January 2018

1 reference

Autonomous Boolean modelling of developmental gene regulatory networks

21 January 2018

1 reference

Modeling stochasticity and variability in gene regulatory networks

21 January 2018

1 reference

Robustness and fragility of Boolean models for genetic regulatory networks.

21 January 2018

1 reference

Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.

21 January 2018

1 reference

Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics.

21 January 2018

1 reference

Synchronous versus asynchronous modeling of gene regulatory networks

21 January 2018

1 reference

Boolean network simulations for life scientists

21 January 2018

1 reference

BoolNet--an R package for generation, reconstruction and analysis of Boolean networks

21 January 2018

1 reference

A SAT-based algorithm for finding attractors in synchronous Boolean networks.

21 January 2018

1 reference

Dynamical modeling and analysis of large cellular regulatory networks.

21 January 2018

1 reference

Stability of the Kauffman model

21 January 2018

1 reference

Reduction of Boolean network models.

21 January 2018

1 reference

Cancer attractors: a systems view of tumors from a gene network dynamics and developmental perspective

21 January 2018

1 reference

Computing combinatorial intervention strategies and failure modes in signaling networks.

21 January 2018

1 reference

Elementary signaling modes predict the essentiality of signal transduction network components

21 January 2018

1 reference

An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks

21 January 2018

1 reference

Qualitative simulation of genetic regulatory networks using piecewise-linear models.

21 January 2018

1 reference

Constraint-based network model of pathogen-immune system interactions

21 January 2018

1 reference

Genetic Network Analyzer: qualitative simulation of genetic regulatory networks.

21 January 2018

1 reference

Dynamic simulation of regulatory networks using SQUAD

21 January 2018

1 reference

Odefy--from discrete to continuous models.

21 January 2018

1 reference

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.

21 January 2018

1 reference

Logical modelling of regulatory networks with GINsim 2.3.

21 January 2018

1 reference

Polynomial algebra of discrete models in systems biology

21 January 2018

1 reference

ADAM: analysis of discrete models of biological systems using computer algebra

21 January 2018

1 reference

Constraint and contingency in multifunctional gene regulatory circuits

21 January 2018

1 reference

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling

21 January 2018

1 reference

Hierarchy of models: from qualitative to quantitative analysis of circadian rhythms in cyanobacteria.

21 January 2018

1 reference

Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors

21 January 2018

1 reference

Logic-based models for the analysis of cell signaling networks

21 January 2018

1 reference

Logic-based models in systems biology: a predictive and parameter-free network analysis method.

21 January 2018

1 reference

Boolean models of within-host immune interactions

21 January 2018

1 reference

Dynamically consistent reduction of logical regulatory graphs

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/WSBM.1273

1 reference

1 September 2017

1 reference