(Q38261255)

1 September 2017

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title

Ubiquitin-binding domains: mechanisms of ubiquitin recognition and use as tools to investigate ubiquitin-modified proteomes (English)

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1 September 2017

Neil J Oldham

2

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Robert Layfield

object named as

Robert Layfield

5

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Mark S. Searle

object named as

Mark S Searle

4

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author name string

Daniel Scott

1

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1 September 2017

Jo Strachan

3

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1 September 2017

language of work or name

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28 December 2014

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1 September 2017

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1 September 2017

volume

15

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1 September 2017

issue

5-6

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1 September 2017

page(s)

844-861

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https://api.crossref.org/works/10.1002%2FPMIC.201400341

1 September 2017

1 reference

Ubiquitin code assembly and disassembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Enhanced protein degradation by branched ubiquitin chains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin-binding proteins: decoders of ubiquitin-mediated cellular functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin-binding domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Global changes to the ubiquitin system in Huntington's disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Polyubiquitin-sensor proteins reveal localization and linkage-type dependence of cellular ubiquitin signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin ligase trapping identifies an SCF(Saf1) pathway targeting unprocessed vacuolar/lysosomal proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Independent interactions of ubiquitin-binding domains in a ubiquitin-mediated ternary complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin binding to A20 ZnF4 is required for modulation of NF-κB signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Crystal structure of the ubiquitin binding domains of rabex-5 reveals two modes of interaction with ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Mechanism of Lys48-linked polyubiquitin chain recognition by the Mud1 UBA domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Structural properties of polyubiquitin chains in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin chain conformation regulates recognition and activity of interacting proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Selectivity of the ubiquitin-binding modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Affinity Makes the Difference: Nonselective Interaction of the UBA Domain of Ubiquilin-1 with Monomeric Ubiquitin and Polyubiquitin Chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Two-sided ubiquitin binding explains specificity of the TAB2 NZF domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

The ubiquitin binding domain ZnF UBP recognizes the C-terminal diglycine motif of unanchored ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Linkage-specific avidity defines the lysine 63-linked polyubiquitin-binding preference of rap80.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Recognition of the polyubiquitin proteolytic signal

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Reconstitution of the RIG-I pathway reveals a signaling role of unanchored polyubiquitin chains in innate immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Structural insights into specificity and diversity in mechanisms of ubiquitin recognition by ubiquitin-binding domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and regulates NF-kappaB signalling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Proteomic identification of ubiquitinated proteins from human cells expressing His-tagged ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

An immunoaffinity purification method for the proteomic analysis of ubiquitinated protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Improved quantitative mass spectrometry methods for characterizing complex ubiquitin signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Unraveling the ubiquitin-regulated signaling networks by mass spectrometry-based proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin - omics reveals novel networks and associations with human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Systematic and quantitative assessment of the ubiquitin-modified proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Evaluation of proteomic strategies for analyzing ubiquitinated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Inhibition of anthrax lethal toxin-induced cytolysis of RAW264.7 cells by celastrol

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Hyperubiquitination of proteins in dilated cardiomyopathy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Two-step affinity purification of multiubiquitylated proteins from Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Diverse polyubiquitin interaction properties of ubiquitin-associated domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Identification of ubiquitinated proteins in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

A new method of purification of proteasome substrates reveals polyubiquitination of 20 S proteasome subunits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Evaluation of selected binding domains for the analysis of ubiquitinated proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Probing affinity and ubiquitin linkage selectivity of ubiquitin-binding domains using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Direct activation of protein kinases by unanchored polyubiquitin chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Fluorescence-based sensors to monitor localization and functions of linear and K63-linked ubiquitin chains in cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitination-induced fluorescence complementation (UiFC) for detection of K48 ubiquitin chains in vitro and in live cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Specific recognition of linear polyubiquitin by A20 zinc finger 7 is involved in NF-κB regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Rad23 ubiquitin-associated domains (UBA) inhibit 26 S proteasome-catalyzed proteolysis by sequestering lysine 48-linked polyubiquitin chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Physiologically relevant and portable tandem ubiquitin-binding domain stabilizes polyubiquitylated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

The UBA2 domain functions as an intrinsic stabilization signal that protects Rad23 from proteasomal degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

S5a promotes protein degradation by blocking synthesis of nondegradable forked ubiquitin chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin-interacting motifs inhibit aggregation of polyQ-expanded huntingtin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

A small ubiquitin binding domain inhibits ubiquitin-dependent protein recruitment to DNA repair foci

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Novel approach for characterizing ubiquitin E3 ligase function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

A Strategy for Modulation of Enzymes in the Ubiquitin System

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Protein deubiquitination during oocyte maturation influences sperm function during fertilisation, antipolyspermy defense and embryo development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Activity-based chemical proteomics accelerates inhibitor development for deubiquitylating enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

A small molecule inhibitor of ubiquitin-specific protease-7 induces apoptosis in multiple myeloma cells and overcomes bortezomib resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Ubiquitin C-terminal hydrolase L1 interacts with choline transporter in cholinergic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

A comparative analysis of the ubiquitination kinetics of multiple degrons to identify an ideal targeting sequence for a proteasome reporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Role of monoubiquitylation on the control of IκBα degradation and NF-κB activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Role of ubiquitylation and USP8-dependent deubiquitylation in the endocytosis and lysosomal targeting of plasma membrane KCa3.1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Tetramerization-defects of p53 result in aberrant ubiquitylation and transcriptional activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Post-translational control of IL-1β via the human papillomavirus type 16 E6 oncoprotein: a novel mechanism of innate immune escape mediated by the E3-ubiquitin ligase E6-AP and p53.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Modeling oculopharyngeal muscular dystrophy in myotube cultures reveals reduced accumulation of soluble mutant PABPN1 protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

A novel role of the N terminus of budding yeast histone H3 variant Cse4 in ubiquitin-mediated proteolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

TBK-1 Promotes Autophagy-Mediated Antimicrobial Defense by Controlling Autophagosome Maturation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Protection against murine osteoarthritis by inhibition of the 26S proteasome and lysine-48 linked ubiquitination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Proteomic analysis of the NOS2 interactome in human airway epithelial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

MultiDsk: a ubiquitin-specific affinity resin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Polyubiquitin is required for growth, development and pathogenicity in the rice blast fungus Magnaporthe oryzae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Diggin' on u(biquitin): a novel method for the identification of physiological E3 ubiquitin ligase substrates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Endogenous muscle atrophy F-box mediates pressure overload-induced cardiac hypertrophy through regulation of nuclear factor-kappaB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

OTULIN restricts Met1-linked ubiquitination to control innate immune signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Heterologous SUMO-2/3-ubiquitin chains optimize IκBα degradation and NF-κB activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Multidimensional Protein Identification Technology (MudPIT) Analysis of Ubiquitinated Proteins in Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

The Ubiquitin Ligase XIAP Recruits LUBAC for NOD2 Signaling in Inflammation and Innate Immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Insights into the Molecular Composition of Endogenous Unanchored Polyubiquitin Chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

Nucleolar exit of RNF8 and BRCA1 in response to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400341

21 January 2018

Identifiers

DOI

10.1002/PMIC.201400341

1 reference

1 September 2017

1 reference