(Q38293824)

1 September 2017

1 reference

title

Coupling enrichment methods with proteomics for understanding and treating disease (English)

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1 September 2017

3

Joseph Shiloach

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1 September 2017

5

Michael J Betenbaugh

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1 September 2017

Amit Kumar

1

1 reference

1 September 2017

Deniz Baycin-Hizal

series ordinal

2

1 reference

1 September 2017

Michael A Bowen

series ordinal

4

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1 September 2017

publication date

19 January 2015

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Proteomics - Clinical Applications

1 September 2017

published in

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1 September 2017

volume

9

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1 September 2017

issue

1-2

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1 September 2017

page(s)

33-47

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The human proteome project: Current state and future direction.

1 September 2017

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Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes

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Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC)

21 January 2018

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Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays.

21 January 2018

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Quantitative cell signalling analysis reveals down-regulation of MAPK pathway activation in colorectal cancer

21 January 2018

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LKB1 is necessary for Akt-mediated phosphorylation of proapoptotic proteins

21 January 2018

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Enrichment of integral membrane proteins from small amounts of brain tissue

21 January 2018

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An optimized method for the isolation and identification of membrane proteins

21 January 2018

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Analysis of a membrane-enriched proteome from postmortem human brain tissue in Alzheimer's disease.

21 January 2018

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Plasma membrane proteomics identifies bone marrow stromal antigen 2 as a potential therapeutic target in endometrial cancer.

21 January 2018

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Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components

21 January 2018

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Cardiac extracellular proteome profiling and membrane topology analysis using glycoproteomics.

21 January 2018

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Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.

21 January 2018

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Glycoproteomic and glycomic databases

21 January 2018

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Glycoproteomic analysis identifies human glycoproteins secreted from HIV latently infected T cells and reveals their presence in HIV+ plasma

21 January 2018

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Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Characterization of disease-associated N-linked glycoproteins

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Application of glycoproteomics for the discovery of biomarkers in lung cancer

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Metabolic flux increases glycoprotein sialylation: implications for cell adhesion and cancer metastasis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications

21 January 2018

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Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identification of salivary N-glycoproteins and measurement of glycosylation site occupancy by boronate glycoprotein enrichment and liquid chromatography/electrospray ionization tandem mass spectrometry.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

GlycoFly: a database of Drosophila N-linked glycoproteins identified using SPEG--MS techniques

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Solid-phase extraction of N-linked glycopeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

A new method for quantitative analysis of cell surface glycoproteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Glycoproteomics enabled by tagging sialic acid- or galactose-terminated glycans

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Enrichment of plasma membrane proteins using nanoparticle pellicles: comparison between silica and higher density nanoparticles

21 January 2018

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Use of colloidal silica-beads for the isolation of cell-surface proteins for mass spectrometry-based proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

A placental sub-proteome: the apical plasma membrane of the syncytiotrophoblast

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

An in vivo membrane density perturbation strategy for identification of liver sinusoidal surface proteome accessible from the vasculature.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPRCA.201400097

Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Mass spectrometric protein maps for biomarker discovery and clinical research

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Statistical inference from multiple iTRAQ experiments without using common reference standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Plasma membrane proteomics of tumor spheres identify CD166 as a novel marker for cancer stem-like cells in head and neck squamous cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Affinity enrichment of plasma membrane for proteomics analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Reducing agent-mediated precipitation of high-abundance plasma proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

A fast and reproducible method for albumin isolation and depletion from serum and cerebrospinal fluid.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Analysis of peptides by denaturing ultrafiltration and LC-MALDI-TOF-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

The plasma proteome identifies expected and novel proteins correlated with micronutrient status in undernourished Nepalese children.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic analysis of cancer stem cells in human prostate cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Global impact of oncogenic Src on a phosphotyrosine proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Phosphorylation of mutant huntingtin at serine 116 modulates neuronal toxicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

TSLP signaling network revealed by SILAC-based phosphoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Phosphoproteomic analysis of human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

MAPK signalling pathways as molecular targets for anti-inflammatory therapy--from molecular mechanisms to therapeutic benefits

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

New approaches to the treatment of inflammatory disorders small molecule inhibitors of p38 MAP kinase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Regulating insulin signaling and beta-cell function through IRS proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Discovery of cellular substrates for protein kinase A using a peptide array screening protocol

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Human protein reference database as a discovery resource for proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Development of human protein reference database as an initial platform for approaching systems biology in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Human Proteinpedia enables sharing of human protein data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Human Proteinpedia: a unified discovery resource for proteomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Analysis of phosphorylated proteins and peptides by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identification of the phosphotyrosine proteome from thrombin activated platelets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Phosphotyrosine proteomic study of interferon alpha signaling pathway using a combination of immunoprecipitation and immobilized metal affinity chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Phosphoproteomic analysis of Her2/neu signaling and inhibition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Quantitative proteomics using stable isotope labeling with amino acids in cell culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Temporal perturbation of tyrosine phosphoproteome dynamics reveals the system-wide regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identification of tyrosine-phosphorylated proteins associated with metastasis and functional analysis of FER in human hepatocellular carcinoma cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Extracellular vesicles as prospective carriers of oncogenic protein signatures in adult and paediatric brain tumours

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosomes reflect the hypoxic status of glioma cells and mediate hypoxia-dependent activation of vascular cells during tumor development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Microvesicles secreted by macrophages shuttle invasion-potentiating microRNAs into breast cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosomal Proteome Profiling: A Potential Multi-Marker Cellular Phenotyping Tool to Characterize Hypoxia-Induced Radiation Resistance in Breast Cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Inferring alterations in cell-to-cell communication in HER2+ breast cancer using secretome profiling of three cell models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

The overexpression of a single oncogene (ERBB2/HER2) alters the proteomic landscape of extracellular vesicles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic analysis of hypoxia-induced U373MG glioma secretome reveals novel hypoxia-dependent migration factors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Bladder cancer exosomes contain EDIL-3/Del1 and facilitate cancer progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomics analysis of cancer exosomes using a novel modified aptamer-based array (SOMAscan™) platform.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Quantitative proteomics of fractionated membrane and lumen exosome proteins from isogenic metastatic and nonmetastatic bladder cancer cells reveal differential expression of EMT factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosomal ITGA3 interferes with non-cancerous prostate cell functions and is increased in urine exosomes of metastatic prostate cancer patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Unexpected gain of function for the scaffolding protein plectin due to mislocalization in pancreatic cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

MicroRNA and protein profiling of brain metastasis competent cell-derived exosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identification and characterization of proteins isolated from microvesicles derived from human lung cancer pleural effusions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Differential protein profiling of renal cell carcinoma urinary exosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic analysis of saliva in HIV-positive heroin addicts reveals proteins correlated with cognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

The use of Nanotrap particles technology in capturing HIV-1 virions and viral proteins from infected cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Absence of metalloprotease GP63 alters the protein content of Leishmania exosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosomal proteins in the aqueous humor as novel biomarkers in patients with neovascular age-related macular degeneration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosomes: vehicles for the transfer of toxic proteins associated with neurodegenerative diseases?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Quantitative proteomic analysis of hepatocyte-secreted extracellular vesicles reveals candidate markers for liver toxicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic analysis of microvesicles derived from human colorectal cancer cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Tumor-derived exosomes are a source of shared tumor rejection antigens for CTL cross-priming

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Laser capture microdissection and two-dimensional polyacrylamide gel electrophoresis: evaluation of tissue preparation and sample limitations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Melanoma cell-derived exosomes alter macrophage and dendritic cell functions in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic analysis of exosomes secreted by human mesothelioma cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic and immunologic analyses of brain tumor exosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteomic profiling of exosomes: current perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosomes: proteomic insights and diagnostic potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosome isolation for proteomic analyses and RNA profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Proteome profiling of neuroblastoma-derived exosomes reveal the expression of proteins potentially involved in tumor progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Urinary exosomes and diabetic nephropathy: a proteomic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Exosomes from myeloid-derived suppressor cells carry biologically active proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Identification and proteomic profiling of exosomes in human cerebrospinal fluid

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

SILAC-based quantitative proteomic analysis of gastric cancer secretome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Temporal profiling of the secretome during adipogenesis in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

TagRecon: high-throughput mutation identification through sequence tagging

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Datamining methodology for LC-MALDI-MS based peptide profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

MSight: an image analysis software for liquid chromatography-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Data, information, knowledge and principle: back to metabolism in KEGG

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Integration of biological networks and gene expression data using Cytoscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

A combined transmembrane topology and signal peptide prediction method

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Feature-based prediction of non-classical and leaderless protein secretion

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

A knowledge base for predicting protein localization sites in eukaryotic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

WoLF PSORT: protein localization predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

SPD--a web-based secreted protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

Cell Surface Protein Biotinylation for SDS-PAGE Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRCA.201400097

21 January 2018

Identifiers

DOI

10.1002/PRCA.201400097

1 reference

1 September 2017

1 reference