(Q38310336)

2 September 2017

title

Analysis of the functional role of a G.A sheared base pair by in vitro genetics (English)

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2 September 2017

Sargueil B

1

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2 September 2017

McKenna J

series ordinal

2

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2 September 2017

Burke JM

series ordinal

3

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2 September 2017

language of work or name

English

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publication date

1 October 2000

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Journal of Biological Chemistry

2 September 2017

published in

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2 September 2017

volume

275

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2 September 2017

issue

41

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2 September 2017

page(s)

32157-32166

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Structure and function of the hairpin ribozyme

2 September 2017

cites work

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Identification of the hammerhead ribozyme metal ion binding site responsible for rescue of the deleterious effect of a cleavage site phosphorothioate

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The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

21 January 2018

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Metal ions play a passive role in the hairpin ribozyme catalysed reaction

21 January 2018

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Catalytically active geometry in the reversible circularization of ‘mini-monomer’ RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA

21 January 2018

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Reconstitution of hairpin ribozyme activity following separation of functional domains

21 January 2018

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Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

21 January 2018

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An improved version of the hairpin ribozyme functions as a ribonucleoprotein complex

21 January 2018

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Solution structure of the loop B domain from the hairpin ribozyme

21 January 2018

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The conformation of the sarcin/ricin loop from 28S ribosomal RNA

21 January 2018

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The conformation of loop E of eukaryotic 5S ribosomal RNA.

21 January 2018

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A common RNA loop motif as a docking module and its function in the hammerhead ribozyme

21 January 2018

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Determination of metal ion binding sites within the hairpin ribozyme domains by NMR.

21 January 2018

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Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites

21 January 2018

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Extensive phosphorothioate substitution yields highly active and nuclease-resistant hairpin ribozymes

21 January 2018

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In vitro selection of active hairpin ribozymes by sequential RNA-catalyzed cleavage and ligation reactions.

21 January 2018

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Substrate sequence effects on "hammerhead" RNA catalytic efficiency

21 January 2018

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Mutagenesis of the hairpin ribozyme

21 January 2018

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The influence of junction conformation on RNA cleavage by the hairpin ribozyme in its natural junction form

21 January 2018

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Structural basis for heterogeneous kinetics: reengineering the hairpin ribozyme

21 January 2018

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Substrate selection rules for the hairpin ribozyme determined by in vitro selection, mutation, and analysis of mismatched substrates.

21 January 2018

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'Hairpin' catalytic RNA model: evidence for helices and sequence requirement for substrate RNA.

21 January 2018

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Nucleotide analog interference mapping of the hairpin ribozyme: implications for secondary and tertiary structure formation.

21 January 2018

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Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: implications for secondary structure

21 January 2018

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Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite

21 January 2018

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Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics

21 January 2018

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Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.

21 January 2018

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The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

21 January 2018

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Three-dimensional structure of a hammerhead ribozyme

21 January 2018

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Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

21 January 2018

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The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure

21 January 2018

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Alignment of the two domains of the hairpin ribozyme-substrate complex defined by interdomain photoaffinity crosslinking

21 January 2018

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Probing non-selective cation binding in the hairpin ribozyme with Tb(III).

21 January 2018

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Nucleotide sequence and structural analysis of two satellite RNAs associated with chicory yellow mottle virus

21 January 2018

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Catalytic properties of hairpin ribozymes derived from Chicory yellow mottle virus and arabis mosaic virus satellite RNAs

21 January 2018

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The hairpin ribozyme: structure, assembly and catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA

21 January 2018

1 reference

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A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis

21 January 2018

1 reference

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Modification of primary structures of hairpin ribozymes for probing active conformations

21 January 2018

1 reference

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Inter-domain cross-linking and molecular modelling of the hairpin ribozyme

21 January 2018

1 reference

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Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

21 January 2018

1 reference

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The solvent-protected core of the hairpin ribozyme-substrate complex

21 January 2018

1 reference

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A photo-cross-linkable tertiary structure motif found in functionally distinct RNA molecules is essential for catalytic function of the hairpin ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Structural basis for the guanosine requirement of the hairpin ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Purine functional groups in essential residues of the hairpin ribozyme required for catalytic cleavage of RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

The role of essential pyrimidines in the hairpin ribozyme-catalysed reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Folding of the four-way RNA junction of the hairpin ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Structure-mapping of the hairpin ribozyme. Magnesium-dependent folding and evidence for tertiary interactions within the ribozyme-substrate complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

The stability and structure of tandem GA mismatches in RNA depend on closing base pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Importance of specific adenosine N7-nitrogens for efficient cleavage by a hammerhead ribozyme. A model for magnesium binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Importance of specific guanosine N7-nitrogens and purine amino groups for efficient cleavage by a hammerhead ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

The internal equilibrium of the hairpin ribozyme: temperature, ion and pH effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Analysis of hairpin ribozyme base mutations in loops 2 and 4 and their effects on cis-cleavage in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M005591200

21 January 2018

Identifiers

DOI

10.1074/JBC.M005591200

1 reference

2 September 2017

1 reference