(Q38346030)

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Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

scientific article published on 18 February 2010

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scholarly article

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Europe PubMed Central

2 September 2017

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP). (English)

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Europe PubMed Central

2 September 2017

whole genome sequencing

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based on heuristic

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Kerstin Kaufmann

object named as

Kerstin Kaufmann

1

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author name string

Jose M Muiño

2

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Europe PubMed Central

2 September 2017

Magne Østerås

3

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Europe PubMed Central

2 September 2017

Laurent Farinelli

4

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Europe PubMed Central

2 September 2017

Pawel Krajewski

5

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Europe PubMed Central

2 September 2017

Gerco C Angenent

6

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Europe PubMed Central

2 September 2017

publication date

18 February 2010

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Europe PubMed Central

2 September 2017

Nature Protocols

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Europe PubMed Central

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5

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Europe PubMed Central

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3

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2 September 2017

457-472

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Europe PubMed Central

2 September 2017

https://scigraph.springernature.com/pub.10.1038/nprot.2009.244

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In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment

1 reference

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Tagging of MADS domain proteins for chromatin immunoprecipitation

1 reference

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The key to development: interpreting the histone code?

1 reference

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21 January 2018

Histone modifications and dynamic regulation of genome accessibility in plants.

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21 January 2018

DNA and histone methylation in plants

1 reference

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21 January 2018

Genome-wide analysis of protein-DNA interactions

1 reference

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21 January 2018

Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5.

1 reference

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21 January 2018

Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana

1 reference

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21 January 2018

Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.

1 reference

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21 January 2018

Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

1 reference

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21 January 2018

Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis

1 reference

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A systems approach reveals regulatory circuitry for Arabidopsis trichome initiation by the GL3 and GL1 selectors

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Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower

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Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis

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A serine/threonine protein kinase gene isolated by an in vivo binding procedure using the Arabidopsis floral homeotic gene product, AGAMOUS.

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WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators.

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A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryos.

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

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A large genome center's improvements to the Illumina sequencing system

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Two-step cross-linking method for identification of NF-kappaB gene network by chromatin immunoprecipitation.

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21 January 2018

In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation.

1 reference

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21 January 2018

Stimulus-dependent, promoter-specific binding of transcription factor WRKY1 to Its native promoter and the defense-related gene PcPR1-1 in Parsley.

1 reference

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21 January 2018

Serial ChIP as a tool to investigate the co-localization or exclusion of proteins on plant genes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.244

21 January 2018

Genome-scale validation of deep-sequencing libraries

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.244

21 January 2018

Genomic approach for the understanding of dynamic aspect of chromosome behavior.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.244

21 January 2018

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.244

21 January 2018

ChIP-seq: advantages and challenges of a maturing technology

1 reference

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

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21 January 2018

SOAP: short oligonucleotide alignment program

1 reference

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21 January 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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21 January 2018

Whole-genome sequencing and variant discovery in C. elegans.

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21 January 2018

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

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21 January 2018

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

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21 January 2018

BayesPeak: Bayesian analysis of ChIP-seq data

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21 January 2018

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

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21 January 2018

Accurate whole human genome sequencing using reversible terminator chemistry

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21 January 2018

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

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21 January 2018

Chromatin immunoprecipitation (ChIP) methodology and readouts

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.244

31 March 2020

Chromatin techniques for plant cells

1 reference

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31 March 2020

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

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31 March 2020

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10.1038/NPROT.2009.244

1 reference

Europe PubMed Central

2 September 2017

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1 reference

Europe PubMed Central

2 September 2017

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