(Q38373749)

2 September 2017

HotPoint: hot spot prediction server for protein interfaces (English)

1 reference

2 September 2017

Nurcan Tuncbag

1

0 references

Attila Gursoy

object named as

Attila Gursoy

series ordinal

3

0 references

Özlem Keskin

series ordinal

2

object named as

Ozlem Keskin

1 reference

PMCID

2896123

2 September 2017

language of work or name

English

0 references

publication date

5 May 2010

1 reference

2 September 2017

Nucleic Acids Research

1 reference

2 September 2017

38

1 reference

2 September 2017

W402-6

1 reference

2 September 2017

Web Server issue

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

2 September 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Biomolecules in the computer: Jmol to the rescue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

A feature-based approach to modeling protein-protein interaction hot spots.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

KFC Server: interactive forecasting of protein interaction hot spots.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Protein-protein interaction hotspots carved into sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Hot-spot mimicry of a cytokine receptor by a small molecule

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Targeting protein-protein interactions with small molecules: challenges and perspectives for computational binding epitope detection and ligand finding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Anchor residues in protein-protein interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

A simple physical model for binding energy hot spots in protein-protein complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Computational alanine scanning of the 1:1 human growth hormone-receptor complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Anatomy of hot spots in protein interfaces

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

A hot spot of binding energy in a hormone-receptor interface

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Empirical estimation of the energetic contribution of individual interface residues in structures of protein-protein complexes.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Characterization and Prediction of Protein Interfaces to Infer Protein-Protein Interaction Networks

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

HotSprint: database of computational hot spots in protein interfaces

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

Computational alanine scanning of protein-protein interfaces

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896123

An automated decision-tree approach to predicting protein interaction hot spots

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20444871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

18 Systematic mutational analyses of protein-protein interfaces

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20444871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ323

1 reference

2 September 2017

journals/nar/TuncbagKG10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 September 2017

1 reference

PMCID

2896123