(Q36280764)

13 August 2017

Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions (English)

1 reference

13 August 2017

1

Keskin O

1 reference

13 August 2017

Bahar I

2

1 reference

13 August 2017

Badretdinov AY

series ordinal

3

1 reference

13 August 2017

Ptitsyn OB

series ordinal

4

1 reference

13 August 2017

Jernigan RL

series ordinal

5

1 reference

13 August 2017

1 December 1998

1 reference

13 August 2017

1 reference

13 August 2017

7

1 reference

13 August 2017

2578-2586

1 reference

13 August 2017

12

1 reference

Protein fold recognition without Boltzmann statistics or explicit physical basis

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Structural motifs at protein-protein interfaces: protein cores versus two-state and three-state model complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Perspectives in protein-fold recognition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Coordination geometry of nonbonded residues in globular proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

How to derive a protein folding potential? A new approach to an old problem

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Potential energy functions for threading

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Structure-derived potentials and protein simulations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

A role for surface hydrophobicity in protein-protein recognition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Knowledge-based potentials for proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Principles of protein folding--a perspective from simple exact models.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

The Protein Data Bank: a computer-based archival file for macromolecular structures

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

How do potentials derived from structural databases relate to "true" potentials?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Hydrophobic folding units at protein-protein interfaces: implications to protein folding and to protein-protein association

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Statistical potentials extracted from protein structures: how accurate are they?

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143898

Why do protein architectures have Boltzmann-like statistics?

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9865952

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hydrophobic patches on protein subunit interfaces: characteristics and prediction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9865952

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PRO.5560071211

1 reference

13 August 2017

1 reference

13 August 2017

1 reference