(Q36852823)

16 August 2017

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title

Perspectives in protein-fold recognition (English)

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16 August 2017

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Torda AE

1

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16 August 2017

publication date

1 April 1997

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Current Opinion in Structural Biology

16 August 2017

published in

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16 August 2017

volume

7

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16 August 2017

issue

2

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16 August 2017

page(s)

200-205

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Potential energy functions for threading

16 August 2017

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Structure-derived potentials and protein simulations

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Knowledge-based potentials for proteins

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7 January 2021

A new approach to protein fold recognition

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Distance distributions in proteins: a six-parameter representation

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Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

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Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches

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Development of pseudoenergy potentials for assessing protein 3-D-1-D compatibility and detecting weak homologies

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Protein structural similarities predicted by a sequence-structure compatibility method

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Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

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Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

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Detection of protein 3D-1D compatibility characterized by the evaluation of side-chain packing and electrostatic interactions

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Energy functions that discriminate X-ray and near native folds from well-constructed decoys

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Statistical potentials extracted from protein structures: how accurate are they?

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7 January 2021

How optimization of potential functions affects protein folding

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7 January 2021

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Search for the most stable folds of protein chains: I. Application of a self-consistent molecular field theory to a problem of protein three-dimensional structure prediction

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Search for the most stable folds of protein chains: II. Computation of stable architectures of beta-proteins using a self-consistent molecular field theory.

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Protein structure prediction by threading methods: evaluation of current techniques

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The protein threading problem with sequence amino acid interaction preferences is NP-complete

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Threading a database of protein cores

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7 January 2021

Protein fold recognition by threading: comparison of algorithms and analysis of results.

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7 January 2021

How Many Protein Folding Motifs are There?

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7 January 2021

Threading analysis suggests that the obese gene product may be a helical cytokine

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7 January 2021

An empirical energy function for threading protein sequence through the folding motif

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7 January 2021

Successful protein fold recognition by optimal sequence threading validated by rigorous blind testing

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7 January 2021

Helmholtz free energy of peptide hydrogen bonds in proteins

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7 January 2021

Helmholtz free energies of atom pair interactions in proteins

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7 January 2021

10.1016/S0959-440X(97)80026-7

Identifiers

DOI

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16 August 2017

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