(Q38390627)

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Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: insights from liver tissue.

scientific article published on 08 July 2014

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scholarly article

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12 March 2020

Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: insights from liver tissue (English)

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12 March 2020

Shotgun proteomics

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Alessandro Tanca

1

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12 March 2020

Marcello Abbondio

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12 March 2020

Salvatore Pisanu

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12 March 2020

Maria Filippa Addis

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12 March 2020

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Sergio Uzzau

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12 March 2020

Daniela Pagnozzi

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Daniela Pagnozzi

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12 March 2020

publication date

8 July 2014

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12 March 2020

Clinical Proteomics

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12 March 2020

11

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12 March 2020

1

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12 March 2020

28

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12 March 2020

https://scigraph.springernature.com/pub.10.1186/1559-0275-11-28

0 references

Applications of mass spectrometry for quantitative protein analysis in formalin-fixed paraffin-embedded tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Phosphoproteome analysis of formalin-fixed and paraffin-embedded tissue sections mounted on microscope slides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Accessing microenvironment compartments in formalin-fixed paraffin-embedded tissues by protein expression analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Toward improving the proteomic analysis of formalin-fixed, paraffin-embedded tissue.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Analysis of the formalin-fixed paraffin-embedded tissue proteome: pitfalls, challenges, and future prospectives.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Proteomic studies of formalin-fixed paraffin-embedded tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Shotgun proteomics of archival triple-negative breast cancer samples

1 reference

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6 September 2017

Complete solubilization of formalin-fixed, paraffin-embedded tissue may improve proteomic studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Improved protein extraction and protein identification from archival formalin-fixed paraffin-embedded human aortas

1 reference

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6 September 2017

Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins

1 reference

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6 September 2017

Application of 2D-DIGE to formalin-fixed diseased tissue samples from hospital repositories: results from four case studies

1 reference

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6 September 2017

The proteomics of formalin-fixed wax-embedded tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Comparability of differential proteomics data generated from paired archival fresh-frozen and formalin-fixed samples by GeLC-MS/MS and spectral counting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Setting proteins free: progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Standardization of a sample preparation and analytical workflow for proteomics of archival endometrial cancer tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Comprehensive tissue processing strategy for quantitative proteomics of formalin-fixed multiple sclerosis lesions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Comparison between procedures using SDS for shotgun proteomic analyses of complex samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Efficient removal of detergents from proteins and peptides in a spin column format

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Antigen retrieval immunohistochemistry: review and future prospects in research and diagnosis over two decades

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

MALDI direct analysis and imaging of frozen versus FFPE tissues: what strategy for which sample?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry

1 reference

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6 September 2017

2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Clinical proteomic applications of formalin-fixed paraffin-embedded tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Universal sample preparation method for proteome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: unlocking the proteome within

1 reference

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6 September 2017

Liquid Tissue: proteomic profiling of formalin-fixed tissues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

6 September 2017

Formaldehyde fixation

1 reference

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Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands

1 reference

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23 June 2018

Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome.

1 reference

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31 August 2018

Proteomic analysis of formalin fixed tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115481

31 August 2018

Single pH buffer refolding screen for protein from inclusion bodies.

1 reference

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31 August 2018

Macromolecular changes caused by formalin fixation and antigen retrieval

1 reference

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31 August 2018

Sample preparation and digestion for proteomic analyses using spin filters

1 reference

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31 August 2018

Identification of formaldehyde-induced modifications in proteins: reactions with model peptides

1 reference

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31 August 2018

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1 reference

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31 August 2018

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

1 reference

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3 December 2018

Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues

1 reference

https://pubmed.ncbi.nlm.nih.gov/25097466

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

iTRAQ-2DLC-ESI-MS/MS based identification of a new set of immunohistochemical biomarkers for classification of dysplastic nodules and small hepatocellular carcinoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/25097466

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1559-0275-11-28

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25097466%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PMC publication ID

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25097466%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25097466%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

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