(Q38434106)

14 June 2018

title

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper. (English)

1 reference

14 June 2018

7

Peer Bork

0 references

Lars Juhl Jensen

5

Lars Juhl Jensen

0 references

Luis Pedro Coelho

Luis Pedro Coelho

3

0 references

Christian von Mering

Christian von Mering

6

0 references

Jaime Huerta-Cepas

1

Jaime Huerta-Cepas

1 reference

14 June 2018

Sofia K. Forslund

2

Kristoffer Forslund

1 reference

14 June 2018

Damian Szklarczyk

4

Damian Szklarczyk

1 reference

14 June 2018

publication date

1 August 2017

1 reference

14 June 2018

Molecular Biology and Evolution

published in

1 reference

14 June 2018

volume

34

1 reference

14 June 2018

issue

8

1 reference

14 June 2018

page(s)

2115-2122

1 reference

14 June 2018

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

MOCAT2: a metagenomic assembly, annotation and profiling framework

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Standardized benchmarking in the quest for orthologs

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Gene Ontology Consortium: going forward

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Expanded microbial genome coverage and improved protein family annotation in the COG database

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Fast and sensitive protein alignment using DIAMOND

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

InterProScan 5: genome-scale protein function classification

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Pfam: the protein families database

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Data, information, knowledge and principle: back to metabolism in KEGG

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Assessment of metagenomic assembly using simulated next generation sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Accelerated Profile HMM Searches

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

High-throughput functional annotation and data mining with the Blast2GO suite

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Protein homology detection by HMM-HMM comparison

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

A genomic perspective on protein families

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Distinguishing Homologous from Analogous Proteins

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Accurate and universal delineation of prokaryotic species

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

Functional and evolutionary implications of gene orthology.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850834

31 August 2018

Identifiers

DOI

10.1093/MOLBEV/MSX148

1 reference

14 June 2018

PMC publication ID

5850834

1 reference

14 June 2018

PubMed publication ID

28460117

1 reference

14 June 2018