(Q30002335)

11

0 references

Peer Bork

13

0 references

Damian Szklarczyk

2

0 references

Jaime Huerta-Cepas

1

0 references

Sofia K. Forslund

3

0 references

Shinichi Sunagawa

9

Shinichi Sunagawa

0 references

Helen Victoria Cook

Helen Cook

4

0 references

Daniel R Mende

Daniel R. Mende

8

0 references

Thomas Rattei

Thomas Rattei

7

0 references

Davide Heller

5

Davide Heller

0 references

Christian von Mering

12

Christian von Mering

0 references

author name string

Mathias C. Walter

6

0 references

Michael Kuhn

Creative Commons Attribution 4.0 International

10

0 references

language of work or name

English

0 references

publication date

17 November 2015

0 references

published in

Nucleic Acids Research

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volume

44

0 references

issue

D1

0 references

page(s)

D286-D293

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copyright license

start time

15 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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22 May 2017

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22 May 2017

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Accelerated Profile HMM Searches

22 May 2017

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Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

22 May 2017

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Orthology prediction methods: a quality assessment using curated protein families

22 May 2017

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Testing the ortholog conjecture with comparative functional genomic data from mammals

22 May 2017

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

22 May 2017

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FastTree 2--approximately maximum-likelihood trees for large alignments

22 May 2017

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ETE: a python Environment for Tree Exploration

22 May 2017

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

22 May 2017

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How confident can we be that orthologs are similar, but paralogs differ?

22 May 2017

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eggNOG: automated construction and annotation of orthologous groups of genes

22 May 2017

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PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways

22 May 2017

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M-Coffee: combining multiple sequence alignment methods with T-Coffee

22 May 2017

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

22 May 2017

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OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

22 May 2017

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Orthologs, paralogs, and evolutionary genomics

22 May 2017

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

22 May 2017

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The COG database: an updated version includes eukaryotes

22 May 2017

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A genomic perspective on protein families

22 May 2017

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Basic local alignment search tool

22 May 2017

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Ocean plankton. Structure and function of the global ocean microbiome

22 May 2017

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Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales

3 June 2018

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Expanded microbial genome coverage and improved protein family annotation in the COG database

3 June 2018

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The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

3 June 2018

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A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation

3 June 2018

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SMART: recent updates, new developments and status in 2015.

3 June 2018

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OrthoInspector 2.0: Software and database updates

3 June 2018

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An integrated catalog of reference genes in the human gut microbiome

3 June 2018

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RefSeq microbial genomes database: new representation and annotation strategy

3 June 2018

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PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome

3 June 2018

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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

Ensembl Genomes 2013: scaling up access to genome-wide data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

Following gene duplication, paralog interference constrains transcriptional circuit evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

Hieranoid: hierarchical orthology inference

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

Orthologous gene clusters and taxon signature genes for viruses of prokaryotes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702882

Functional and evolutionary implications of gene orthology.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1248

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1248

Bushes in the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1248

My worries are no longer behind me.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1248

Endosymbiotic origin and differential loss of eukaryotic genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1248

Assigning duplication events to relative temporal scales in genome-wide studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1248

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV1248

1 reference

journals/nar/Huerta-CepasSFC16

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

26582926

1 reference