(Q38507628)

English

Subnuclear proteomics in colorectal cancer: identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression.

scientific article published on 20 January 2010

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20089989%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Subnuclear proteomics in colorectal cancer: identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20089989%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

colorectal cancer

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colorectal carcinoma

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Jakob Albrethsen

1

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17 January 2020

Remond Fijneman

9

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17 January 2020

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Connie R Jimenez

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17 January 2020

Sander R Piersma

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Sander R Piersma

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17 January 2020

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Gerrit A Meijer

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17 January 2020

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Meike de Wit

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17 January 2020

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Jaco C Knol

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17 January 2020

Henk M W Verheul

8

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Henk M W Verheul

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17 January 2020

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Sandra Mongera

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17 January 2020

author name string

Thang V Pham

4

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17 January 2020

Beatriz Carvalho

7

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17 January 2020

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20 January 2010

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17 January 2020

Molecular & Cellular Proteomics

1 reference

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17 January 2020

9

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Europe PubMed Central

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17 January 2020

5

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20089989%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

988-1005

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20089989%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

High-throughput and targeted in-depth mass spectrometry-based approaches for biofluid profiling and biomarker discovery

1 reference

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6 September 2017

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

High resolution analysis of DNA copy-number aberrations of chromosomes 8, 13, and 20 in gastric cancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Chromatin-associated proteins HMGB1/2 and PDIA3 trigger cellular response to chemotherapy-induced DNA damage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Enhanced genomic instabilities caused by deregulated microtubule dynamics and chromosome segregation: a perspective from genetic studies in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Parvulin (Par14), a peptidyl-prolyl cis-trans isomerase, is a novel rRNA processing factor that evolved in the metazoan lineage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

A-type nuclear lamins act as transcriptional repressors when targeted to promoters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

HMGB1 and HMGB2 proteins up-regulate cellular expression of human topoisomerase IIalpha

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

What the nucleolus says to a tumour pathologist.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Unravelling the nuclear matrix proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Nucleophosmin serves as a rate-limiting nuclear export chaperone for the Mammalian ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Dimerization of FIR upon FUSE DNA binding suggests a mechanism of c-myc inhibition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Nuclear structure as a source of cancer specific biomarkers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

STRING 7--recent developments in the integration and prediction of protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Of extracellular matrix, scaffolds, and signaling: tissue architecture regulates development, homeostasis, and cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Proteomics of organelles and large cellular structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Deciphering the human nucleolar proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Systems biology in the cell nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Nestin structure and predicted function in cellular cytoskeletal organisation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

NMPdb: Database of Nuclear Matrix Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Role of the nuclear matrix proteins in malignant transformation and cancer diagnosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

The adenomatous polyposis coli protein: the Achilles heel of the gut epithelium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Nuclear structure in cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Actin up in the nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

A statistical model for identifying proteins by tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Nuclear membrane proteins with potential disease links found by subtractive proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Phosphorylation of the N-terminal domain regulates subcellular localization and DNA binding properties of the peptidyl-prolyl cis/trans isomerase hPar14

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Large-scale proteomic analysis of the human spliceosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

APC, signal transduction and genetic instability in colorectal cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Directed proteomic analysis of the human nucleolus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

CHMP1 is a novel nuclear matrix protein affecting chromatin structure and cell-cycle progression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Fatal connections: when DNA ends meet on the nuclear matrix.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Nucleophosmin/B23 is a target of CDK2/cyclin E in centrosome duplication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Preferential cleavage in pre-ribosomal RNA byprotein B23 endoribonuclease

1 reference

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6 September 2017

Genetic instability in colorectal cancers

1 reference

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6 September 2017

The nuclear matrix revealed by eluting chromatin from a cross-linked nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Epithelial cytoskeletal framework and nuclear matrix-intermediate filament scaffold: three-dimensional organization and protein composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Nuclear matrix proteins reflect cell type of origin in cultured human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Cancer as a disease of DNA organization and dynamic cell structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

6 September 2017

Translational activation of snail1 and other developmentally regulated transcription factors by YB-1 promotes an epithelial-mesenchymal transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

14 September 2017

Galectin-3 stabilizes heterogeneous nuclear ribonucleoprotein Q to maintain proliferation of human colon cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

14 September 2017

Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900546-MCP200

21 January 2018

Integrated analysis of chromosomal, microsatellite and epigenetic instability in colorectal cancer identifies specific associations between promoter methylation of pivotal tumour suppressor and DNA repair genes and specific chromosomal alterations.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900546-MCP200

21 January 2018

Actin, myosin, cytokeratins and spectrin are components of the guinea pig sperm nuclear matrix

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900546-MCP200

21 January 2018

Altered expression and localization of creatine kinase B, heterogeneous nuclear ribonucleoprotein F, and high mobility group box 1 protein in the nuclear matrix associated with colon cancer

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900546-MCP200

21 January 2018

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1 reference

https://api.crossref.org/works/10.1074%2FMCP.M900546-MCP200

21 January 2018

MLPAnalyzer: data analysis tool for reliable automated normalization of MLPA fragment data.

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31 August 2018

Expression of nucleophosmin/B23 in normal and neoplastic colorectal mucosa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871429

31 August 2018

Colorectal adenoma to carcinoma progression follows multiple pathways of chromosomal instability

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Lamin proteins form an internal nucleoskeleton as well as a peripheral lamina in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear matrix proteins as proteomic markers of preneoplastic and cancer lesions : commentary re: G. Brunagel et al., nuclear matrix protein alterations associated with colon cancer metastasis to the liver. Clin. Cancer Res., 8: 3039-3045, 2002

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tissue subcellular fractionation and protein extraction for use in mass-spectrometry-based proteomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of bladder cancer using a novel nuclear matrix protein, BLCA-4

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Clinical proteomics: personalized molecular medicine

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High mobility group protein I(Y): a candidate architectural protein for chromosomal rearrangements in prostate cancer cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhanced coexpression of YB-1 and DNA topoisomerase II alpha genes in human colorectal carcinomas

1 reference

https://pubmed.ncbi.nlm.nih.gov/20089989

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.M900546-MCP200

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20089989%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

release_mfpaxfcszze3jaz3j44rvn7jdy

1 reference

https://api.fatcat.wiki/v0/release/mfpaxfcszze3jaz3j44rvn7jdy

24 November 2022

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mapped directly with Wikidata item

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Europe PubMed Central

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17 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20089989%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

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