(Q38516478)

3 September 2017

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12. (English)

1 reference

3 September 2017

0 references

3

Alaa Abi Haidar

1 reference

3 September 2017

Jingjun Sun

1

1 reference

3 September 2017

Kagan Tuncay

2

1 reference

3 September 2017

Lisa Ensman

4

1 reference

3 September 2017

Frank Stanley

5

1 reference

3 September 2017

Michael Trelinski

6

1 reference

3 September 2017

Peter Ortoleva

7

1 reference

3 September 2017

30 March 2007

1 reference

Algorithms for Molecular Biology

3 September 2017

1 reference

3 September 2017

2

1 reference

3 September 2017

2

1 reference

https://scigraph.springernature.com/pub.10.1186/1748-7188-2-2

3 September 2017

0 references

cites work

Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Prediction of functional modules based on comparative genome analysis and Gene Ontology application

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Reverse engineering of regulatory networks in human B cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

CARRIE web service: automated transcriptional regulatory network inference and interactive analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Network component analysis: reconstruction of regulatory signals in biological systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Machaon CVE: cluster validation for gene expression data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Quantitative cell biology with the Virtual Cell

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Discovering molecular pathways from protein interaction and gene expression data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Inferring genetic networks and identifying compound mode of action via expression profiling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Network motifs in the transcriptional regulation network of Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

A cluster validity framework for genome expression data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Dynamic modeling of gene expression data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Genetic network inference: from co-expression clustering to reverse engineering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Gene expression profiling, genetic networks, and cellular states: an integrating concept for tumorigenesis and drug discovery

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Evolution of transcription factors and the gene regulatory network in Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Reveal, a general reverse engineering algorithm for inference of genetic network architectures.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Simulated complex dynamics of glycolysis in the protozoan parasite Trypanosoma brucei

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Simulating cellular dynamics through a coupled transcription, translation, metabolic model.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

The Karyote® Physico-Chemical Genomic, Proteomic, Metabolic Cell Modeling System

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Linear modes of gene expression determined by independent component analysis.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

Approaches to the automatic discovery of patterns in biosequences.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1852316

A probabilistic functional network of yeast genes

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17397539

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A gene network inference method from continuous-value gene expression data of wild-type and mutants

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17397539

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1748-7188-2-2

1 reference

journals/almob/SunTHESTO07

3 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

3 September 2017

1 reference