(Q38669058)

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A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA.

scientific article published on 20 July 2017

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scholarly article

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Europe PubMed Central

5 September 2017

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA. (English)

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Europe PubMed Central

5 September 2017

3

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6 June 2020

Peter V Kharchenko

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6 June 2020

8

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6 June 2020

Sten Linnarsson

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Sten Linnarsson

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6 June 2020

author name string

Blue B Lake

1

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6 June 2020

Simone Codeluppi

2

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6 June 2020

Derek Gao

4

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6 June 2020

Jerold Chun

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6 June 2020

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20 July 2017

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5 September 2017

Scientific Reports

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6 June 2020

7

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6 June 2020

1

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6 June 2020

6031

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6 June 2020

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Creative Commons Attribution 4.0 International

20 July 2017

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April 2022 Public Data File from Crossref

copyright status

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https://scigraph.springernature.com/pub.10.1038/s41598-017-04426-w

0 references

Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Nuclear Retention of mRNA in Mammalian Tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Somatic mutation in single human neurons tracks developmental and transcriptional history

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Genomic mosaicism with increased amyloid precursor protein (APP) gene copy number in single neurons from sporadic Alzheimer's disease brains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Selective nuclear export of specific classes of mRNA from mammalian nuclei is promoted by GANP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

RNA-sequencing from single nuclei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Neuronal DNA content variation (DCV) with regional and individual differences in the human brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Comparison of the contributions of the nuclear and cytoplasmic compartments to global gene expression in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Global reconstruction of the human metabolic network based on genomic and bibliomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Constitutional aneuploidy in the normal human brain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Tbr1 regulates differentiation of the preplate and layer 6.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

T-brain-1: a homolog of Brachyury whose expression defines molecularly distinct domains within the cerebral cortex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

6 September 2017

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519641

25 September 2017

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

1 reference

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23 June 2018

Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

1 reference

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23 June 2018

The External RNA Controls Consortium: a progress report.

1 reference

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31 August 2018

Identifiers

10.1038/S41598-017-04426-W

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729663%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

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1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729663%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729663%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

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