(Q38701329)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

title

CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

Lukas M Weber

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

Felix J Hartmann

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

Mitchell P Levesque

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

Mark D. Robinson

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

author name string

Malgorzata Nowicka

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

Helena L Crowell

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

Silvia Guglietta

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

Mitchell P Levesque

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

publication date

26 May 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

page(s)

748

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

24 March 2020

copyright license

start time

24 May 2019

1 reference

April 2022 Public Data File from Crossref

Creative Commons Attribution 4.0 International

start time

26 May 2017

1 reference

April 2022 Public Data File from Crossref

0 references

0 references

Testing for differential abundance in mass cytometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Comparison of clustering methods for high-dimensional single-cell flow and mass cytometry data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

High-dimensional single-cell analysis reveals the immune signature of narcolepsy.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Computational flow cytometry: helping to make sense of high-dimensional immunology data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Identification of Vaccine-Altered Circulating B Cell Phenotypes Using Mass Cytometry and a Two-Step Clustering Analysis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

destiny: diffusion maps for large-scale single-cell data in R.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

COMPASS identifies T-cell subsets correlated with clinical outcomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Diffusion maps for high-dimensional single-cell analysis of differentiation data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Identification and visualization of multidimensional antigen-specific T-cell populations in polychromatic cytometry data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

limma powers differential expression analyses for RNA-sequencing and microarray studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Mapping Splicing Quantitative Trait Loci in RNA-Seq.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Automated identification of stratifying signatures in cellular subpopulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Mixture models for single-cell assays with applications to vaccine studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Normalization of mass cytometry data with bead standards

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Critical assessment of automated flow cytometry data analysis techniques.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Web-based analysis and publication of flow cytometry experiments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

flowCore: a Bioconductor package for high throughput flow cytometry

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Moderated statistical tests for assessing differences in tag abundance

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Optimizing a multicolor immunophenotyping assay

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Characterizing cell subsets using marker enrichment modeling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Sensitive detection of rare disease-associated cell subsets via representation learning.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Automated high-dimensional flow cytometric data analysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Another step on the path to mass cytometry standardization.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

Spectral compensation for flow cytometry: visualization artifacts, limitations, and caveats.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5473464

How to Use t-SNE Effectively

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.12688%2FF1000RESEARCH.11622.1

Per-channel basis normalization methods for flow cytometry data

21 January 2018

1 reference

12 December 2020

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.

1 reference

12 December 2020

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types.

1 reference

12 December 2020

SIMLR: A Tool for Large-Scale Genomic Analyses by Multi-Kernel Learning.

1 reference

12 December 2020

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks

1 reference

12 December 2020

Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor.

1 reference

12 December 2020

Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry.

1 reference

12 December 2020

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

1 reference

12 December 2020

Mixed-effects association of single cells identifies an expanded effector CD4 T cell subset in rheumatoid arthritis

1 reference

12 December 2020

Dimensionality reduction for visualizing single-cell data using UMAP

1 reference

12 December 2020

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

1 reference

12 December 2020

10.12688/F1000RESEARCH.11622.1

Identifiers

DOI

1 reference

10.12688/F1000RESEARCH.11622.3

5 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28663787%20AND%20SRC:MED&resulttype=core&format=json

24 March 2020

PubMed publication ID

28663787

1 reference