(Q64055897)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

title

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Charlotte Soneson

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Mark D. Robinson

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

Roksana Iwanicka-Nowicka

series ordinal

2

Malgorzata Nowicka

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

language of work or name

English

0 references

publication date

14 May 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

published in

Communications Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

issue

1

0 references

page(s)

183

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

26 April 2020

limma

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/6517415

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

ComplexHeatmap

ComplexHeatmap

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding

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Simultaneous epitope and transcriptome measurement in single cells

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Multiplexed quantification of proteins and transcripts in single cells

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Critical assessment of automated flow cytometry data analysis techniques.

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7 January 2021

Comparison of clustering methods for high-dimensional single-cell flow and mass cytometry data.

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7 January 2021

A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.

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7 January 2021

Automated identification of stratifying signatures in cellular subpopulations

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7 January 2021

Sensitive detection of rare disease-associated cell subsets via representation learning.

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7 January 2021

Testing for differential abundance in mass cytometry data

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7 January 2021

CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets.

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7 January 2021

Mixed-effects association of single cells identifies an expanded effector CD4 T cell subset in rheumatoid arthritis

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7 January 2021

FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

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7 January 2021

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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7 January 2021

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

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7 January 2021

limma powers differential expression analyses for RNA-sequencing and microarray studies

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7 January 2021

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

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7 January 2021

Revealing the vectors of cellular identity with single-cell genomics

1 reference

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7 January 2021

https://api.crossref.org/works/10.1038%2FS42003-019-0415-5

1 reference

7 January 2021

Neuronal cell-type classification: challenges, opportunities and the path forward

1 reference

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7 January 2021

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

1 reference

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7 January 2021

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

1 reference

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7 January 2021

High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy

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7 January 2021

Predicting Cell Populations in Single Cell Mass Cytometry Data

1 reference

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7 January 2021

Reverse-engineering flow-cytometry gating strategies for phenotypic labelling and high-performance cell sorting

1 reference

https://api.crossref.org/works/10.1038%2FS42003-019-0415-5

7 January 2021

GateFinder: projection-based gating strategy optimization for flow and mass cytometry

1 reference

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7 January 2021

A computational approach for phenotypic comparisons of cell populations in high-dimensional cytometry data.

1 reference

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7 January 2021

cytometree: A binary tree algorithm for automatic gating in cytometry analysis

1 reference

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7 January 2021

Integrating single-cell transcriptomic data across different conditions, technologies, and species

1 reference

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7 January 2021

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

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7 January 2021

QFMatch: multidimensional flow and mass cytometry samples alignment.

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7 January 2021

CD Nomenclature 2015: Human Leukocyte Differentiation Antigen Workshops as a Driving Force in Immunology

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7 January 2021

Characterizing cell subsets using marker enrichment modeling

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7 January 2021

iSEE: Interactive SummarizedExperiment Explorer.

1 reference

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7 January 2021

OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis

1 reference

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7 January 2021

FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications.

1 reference

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7 January 2021

Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry.

1 reference

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7 January 2021

A scaling normalization method for differential expression analysis of RNA-seq data

1 reference

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7 January 2021

iCOBRA: open, reproducible, standardized and live method benchmarking

1 reference

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7 January 2021

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.

1 reference

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7 January 2021

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/31098416

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S42003-019-0415-5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31098416%20AND%20SRC:MED&resulttype=core&format=json

26 April 2020

PubMed publication ID

31098416

1 reference