(Q36056350)

11 August 2017

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title

Computational flow cytometry: helping to make sense of high-dimensional immunology data (English)

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11 August 2017

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Sofie Van Gassen

2

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Bart Lambrecht

series ordinal

3

object named as

Bart N Lambrecht

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11 August 2017

Yvan Saeys

1

1 reference

11 August 2017

20 June 2016

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Nature Reviews Immunology

11 August 2017

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11 August 2017

16

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11 August 2017

7

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11 August 2017

449-462

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Electronic Separation of Biological Cells by Volume

11 August 2017

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Chromosome measurement and sorting by flow systems

31 March 2020

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HISTORY OF SCIENCE. Flow cytometry strikes gold

31 March 2020

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Seventeen-colour flow cytometry: unravelling the immune system

31 March 2020

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Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry

31 March 2020

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31 March 2020

Spectral flow cytometry

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Multispectral imaging of hematopoietic cells: where flow meets morphology

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Standardization and optimization of multiparameter intracellular cytokine staining

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Standardizing immunophenotyping for the Human Immunology Project

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Subjectivity and flow cytometric variability

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Data analysis as a source of variability of the HLA-peptide multimer assay: from manual gating to automated recognition of cell clusters

31 March 2020

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Beyond the age of cellular discovery.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Flow cytometry data standards

31 March 2020

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ISAC's Gating-ML 2.0 data exchange standard for gating description

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

ISAC's classification results file format

31 March 2020

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ICEFormat-the image cytometry experiment format.

31 March 2020

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Standardized Multi-Color Flow Cytometry and Computational Biomarker Discovery

31 March 2020

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A proposal for unified flow cytometer parameter naming.

31 March 2020

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New approaches to fluorescence compensation and visualization of FACS data

31 March 2020

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MIFlowCyt: the minimum information about a Flow Cytometry Experiment

31 March 2020

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EuroFlow antibody panels for standardized n-dimensional flow cytometric immunophenotyping of normal, reactive and malignant leukocytes

31 March 2020

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Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium

31 March 2020

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Semi-automated and standardized cytometric procedures for multi-panel and multi-parametric whole blood immunophenotyping

31 March 2020

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Publication of optimized multicolor immunofluorescence panels

31 March 2020

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A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.

31 March 2020

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Bioconductor: open software development for computational biology and bioinformatics

31 March 2020

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31 March 2020

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Quality assurance for polychromatic flow cytometry

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

flowCore: a Bioconductor package for high throughput flow cytometry

31 March 2020

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Data quality assessment of ungated flow cytometry data in high throughput experiments

31 March 2020

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flowClean: Automated identification and removal of fluorescence anomalies in flow cytometry data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Thinking outside the gate: single-cell assessments in multiple dimensions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Algorithmic Tools for Mining High-Dimensional Cytometry Data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

The end of gating? An introduction to automated analysis of high dimensional cytometry data.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data

31 March 2020

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Systems biology. Conditional density-based analysis of T cell signaling in single-cell data

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Subject classification obtained by cluster analysis and principal component analysis applied to flow cytometric data.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Categorical Analysis of Human T Cell Heterogeneity with One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Automated high-dimensional flow cytometric data analysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Automated gating of flow cytometry data via robust model-based clustering

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Merging mixture components for cell population identification in flow cytometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Automated flow cytometric analysis across large numbers of samples and cell types

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

immunoClust--An automated analysis pipeline for the identification of immunophenotypic signatures in high-dimensional cytometric datasets

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, part 1: algorithm design

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Data reduction for spectral clustering to analyze high throughput flow cytometry data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

BayesFlow: latent modeling of flow cytometry cell populations

31 March 2020

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Automatic Classification of Cellular Expression by Nonlinear Stochastic Embedding (ACCENSE).

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

High-dimensional analysis of the murine myeloid cell system.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRI.2016.56

Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

A non-parametric Bayesian model for joint cell clustering and cluster matching: identification of anomalous sample phenotypes with random effects

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Cell population identification using fluorescence-minus-one controls with a one-class classifying algorithm.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Enhanced flowType/RchyOptimyx: a BioConductor pipeline for discovery in high-dimensional cytometry data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Automated identification of stratifying signatures in cellular subpopulations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

COMPASS identifies T-cell subsets correlated with clinical outcomes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Competitive SWIFT cluster templates enhance detection of aging changes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

FloReMi: Flow density survival regression using minimal feature redundancy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Probability state modeling theory

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Probability state modeling of memory CD8⁺ T-cell differentiation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Human B-cell and progenitor stages as determined by probability state modeling of multidimensional cytometry data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Wishbone identifies bifurcating developmental trajectories from single-cell data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2016.56

Rapid cell population identification in flow cytometry data

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27320317

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Data File Standard for Flow Cytometry, version FCS 3.1.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27320317

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Per-channel basis normalization methods for flow cytometry data

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27320317

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRI.2016.56

1 reference

11 August 2017

1 reference

PubMed ID

27320317