(Q38795762)

6 September 2017

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title

Making sense of genomic islands of differentiation in light of speciation (English)

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6 September 2017

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2

Hans Ellegren

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6 September 2017

Jochen B W Wolf

1

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6 September 2017

publication date

14 November 2016

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6 September 2017

published in

Nature Reviews Genetics

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6 September 2017

volume

18

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6 September 2017

issue

2

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6 September 2017

page(s)

87-100

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On the Tendency of Species to form Varieties; and on the Perpetuation of Varieties and Species by Natural Means of Selection

6 September 2017

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The many landscapes of recombination in Drosophila melanogaster

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Stable recombination hotspots in birds

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GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species

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Comparative population genomics in animals uncovers the determinants of genetic diversity.

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Natural selection constrains neutral diversity across a wide range of species

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Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species.

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Genomic signatures of selection at linked sites: unifying the disparity among species

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Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

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Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

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The genic view of the process of speciation

21 January 2018

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The genomics of speciation-with-gene-flow

21 January 2018

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Genome evolution and speciation: toward quantitative descriptions of pattern and process

21 January 2018

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The barrier to genetic exchange between hybridising populations

21 January 2018

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The role of meiotic drive in hybrid male sterility.

21 January 2018

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Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast

21 January 2018

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Genomic islands of differentiation between house mouse subspecies

21 January 2018

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Genomic islands of speciation in Anopheles gambiae

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Genomic rearrangements and the evolution of clusters of locally adaptive loci.

21 January 2018

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Genomic islands of divergence are not affected by geography of speciation in sunflowers

21 January 2018

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Genome-wide evidence for speciation with gene flow in Heliconius butterflies

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

Stick insect genomes reveal natural selection's role in parallel speciation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

The hitch-hiking effect of a favourable gene

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

21 January 2018

12 December 2020

Background selection 20 years on: the Wilhelmine E. Key 2012 invitational lecture

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

Incipient speciation by divergent adaptation and antagonistic epistasis in yeast

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Divergence is focused on few genomic regions early in speciation: incipient speciation of sunflower ecotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genomics of divergence along a continuum of parapatric population differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genetic mosaic suggests a new role for hitchhiking in ecological speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Natural selection in action during speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genome-wide patterns of divergence and gene flow across a butterfly radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Hybridization reveals the evolving genomic architecture of speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genomic basis of adaptive evolution in threespine sticklebacks

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genomics of ecological vicariance in threespine stickleback fish

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Ecological genomics of local adaptation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

Mitonuclear Epistasis for Development Time and Its Modification by Diet in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genomic impacts of chromosomal inversions in parapatric Drosophila species

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Forecasting Ecological Genomics: High-Tech Animal Instrumentation Meets High-Throughput Sequencing.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

A genomic perspective on hybridization and speciation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRG.2016.133

Inferring population size changes with sequence and SNP data: lessons from human bottlenecks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Population size changes reshape genomic patterns of diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Evolutionary analysis of the female-specific avian W chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Sex chromosomes and speciation in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Speciation through evolution of sex-linked genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Thinking too positive? Revisiting current methods of population genetic selection inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Inferring human population size and separation history from multiple genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Exploring population size changes using SNP frequency spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Experimental evidence for ecological selection on genome variation in the wild

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genetic variation and the de novo assembly of human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The lavender plumage colour in Japanese quail is associated with a complex mutation in the region of MLPH that is related to differences in growth, feed consumption and body temperature

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Supergenes and complex phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

A supergene determines highly divergent male reproductive morphs in the ruff

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Chromosomal rearrangements and speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Chromosome inversions, local adaptation and speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Chromosomal speciation revisited: rearranging theory with pieces of evidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genome-wide tests for introgression between cactophilic Drosophila implicate a role of inversions during speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genome-wide patterns of genetic variation within and among alternative selective regimes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Divergence and Functional Degradation of a Sex Chromosome-like Supergene

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Coalescent patterns for chromosomal inversions in divergent populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Assessing when chromosomal rearrangements affect the dynamics of speciation: implications from computer simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Long-read sequence assembly of the gorilla genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Skepticism Towards Santa Rosalia, or Why are There so Few Kinds of Animals?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

A fine-scale chimpanzee genetic map from population sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Quantifying the variation in the effective population size within a genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Measures of divergence between populations and the effect of forces that reduce variability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Recombination in the threespine stickleback genome--patterns and consequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The QTN program and the alleles that matter for evolution: all that's gold does not glitter

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genetic differentiation at quantitative trait loci under local adaptation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Adaptation and speciation: what can F(st) tell us?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

A coalescent model of background selection with recombination, demography and variation in selection coefficients

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genomic signature of parallel adaptation from shared genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genomics of organismal diversification illuminated by adaptive radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Transcriptomics of colour patterning and coloration shifts in crows

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish (Coregonus clupeaformis) Species Pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Admixture mapping comes of age

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

A powerful regression-based method for admixture mapping of isolation across the genome of hybrids

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Connecting genotypes, phenotypes and fitness: harnessing the power of CRISPR/Cas9 genome editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

SEX DETERMINATION. A male-determining factor in the mosquito Aedes aegypti

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genomic Access to Monarch Migration Using TALEN and CRISPR/Cas9-Mediated Targeted Mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

What can patterns of differentiation across plant genomes tell us about adaptation and speciation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Assemblathon 1: a competitive assessment of de novo short read assembly methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Mayr's view of Darwin: was Darwin wrong about speciation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

A framework for comparing processes of speciation in the presence of gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

On the origin of species by sympatric speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Sympatric speciation in Nicaraguan crater lake cichlid fish

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Speciation with gene flow on Lord Howe Island

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Theoretical models of the influence of genomic architecture on the dynamics of speciation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Models of speciation: where are we now?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Hybridization and speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genetic hitchhiking and the dynamic buildup of genomic divergence during speciation with gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

On the origin of species by natural and sexual selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Magic traits in speciation: 'magic' but not rare?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Supergenes and their role in evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genetics in geographically structured populations: defining, estimating and interpreting F(ST)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Analysis of Gene Diversity in Subdivided Populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

G(ST) and its relatives do not measure differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Estimating and interpreting FST: the impact of rare variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The relationship between F(ST) and the frequency of the most frequent allele.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Evolution of Darwin's finches and their beaks revealed by genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Sequencing of 50 human exomes reveals adaptation to high altitude

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Mathematical model for studying genetic variation in terms of restriction endonucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

On the number of segregating sites in genetical models without recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Detecting recent positive selection in the human genome from haplotype structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genome-wide detection and characterization of positive selection in human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Unsupervised genome-wide recognition of local relationship patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Speciation along environmental gradients

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genomic landscape of species divergence in Ficedula flycatchers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Inbreeding coefficients and coalescence times

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Genome architecture is a selectable trait that can be maintained by antagonistic pleiotropy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Does linked selection explain the narrow range of genetic diversity across species?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Evaluating loci for use in the genetic analysis of population structure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

The genetical structure of populations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

A standardized genetic differentiation measure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Molecular Evolutionary Genetics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.133

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

31 March 2020

1 reference

12 December 2020

Statistical tests of neutrality of mutations

1 reference

12 December 2020

The structure of genealogies and the distribution of fixed differences between DNA sequence samples from natural populations.

1 reference

12 December 2020

Genetic drift in an infinite population. The pseudohitchhiking model

1 reference

12 December 2020

The effect of deleterious mutations on neutral molecular variation

1 reference

12 December 2020

The population genetics of speciation: the evolution of hybrid incompatibilities

1 reference

12 December 2020

EVOLUTION IN MENDELIAN POPULATIONS

1 reference

12 December 2020

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

1 reference

12 December 2020

Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRG.2016.133

1 reference

Dimensions Publication ID

6 September 2017

1050396931

0 references

1 reference