(Q38880835)

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A tool to evaluate correspondence between extraction ion chromatographic peaks and peptide-spectrum matches in shotgun proteomics experiments

scientific article published on 11 July 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

A tool to evaluate correspondence between extraction ion chromatographic peaks and peptide-spectrum matches in shotgun proteomics experiments (English)

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

Shotgun proteomics

1 reference

based on heuristic

inferred from title

object named as

Keith Rivera

4

0 references

object named as

Cristian I Ruse

1

0 references

object named as

Darryl J Pappin

5

0 references

author name string

Samantha Peacock

2

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

Cornel Ghiban

3

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

Peter Leopold

6

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

publication date

11 July 2013

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

13

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

16

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

2386-2397

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

Quantitative, high-resolution proteomics for data-driven systems biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Improving proteome coverage on a LTQ-Orbitrap using design of experiments

1 reference

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9 September 2017

Targeted large-scale analysis of protein acetylation

1 reference

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9 September 2017

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

A dynamic noise level algorithm for spectral screening of peptide MS/MS spectra

1 reference

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9 September 2017

Value of using multiple proteases for large-scale mass spectrometry-based proteomics

1 reference

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9 September 2017

Unrestricted identification of modified proteins using MS/MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Protein quantification across hundreds of experimental conditions.

1 reference

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9 September 2017

The phosphoproteomics data explosion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Comparison of different signal thresholds on data dependent sampling in Orbitrap and LTQ mass spectrometry for the identification of peptides and proteins in complex mixtures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Proteomics by mass spectrometry: approaches, advances, and applications

1 reference

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9 September 2017

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

1 reference

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9 September 2017

Filtering strategies for improving protein identification in high-throughput MS/MS studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Orbitrap mass spectrometry: instrumentation, ion motion and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

msmsEval: tandem mass spectral quality assignment for high-throughput proteomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Comprehensive two-dimensional liquid chromatography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Dynamic range of mass accuracy in LTQ Orbitrap hybrid mass spectrometer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Quantitative comparison of proteomic data quality between a 2D and 3D quadrupole ion trap

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

The continuing evolution of shotgun proteomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

A two-dimensional quadrupole ion trap mass spectrometer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

New algorithms for processing and peak detection in liquid chromatography/mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

An automated multidimensional protein identification technology for shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Electrostatic axially harmonic orbital trapping: a high-performance technique of mass analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Aldehyde-protein adducts in the liver as a result of ethanol-induced oxidative stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

9 September 2017

Accurate proteome-wide protein quantification from high-resolution 15N mass spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

17 June 2018

Colander: a probability-based support vector machine algorithm for automatic screening for CID spectra of phosphopeptides prior to database search.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

17 June 2018

Identification of post-translational modifications by blind search of mass spectra.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

17 June 2018

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

22 August 2018

Zwitterionic hydrophilic interaction liquid chromatography (ZIC-HILIC and ZIC-cHILIC) provide high resolution separation and increase sensitivity in proteome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

22 August 2018

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

22 August 2018

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

22 August 2018

Automated ultra-high-pressure multidimensional protein identification technology (UHP-MudPIT) for improved peptide identification of proteomic samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

22 August 2018

Automatic quality assessment of peptide tandem mass spectra.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3994887

22 August 2018

Targeted quantitative bioanalysis in plasma using liquid chromatography/high-resolution accurate mass spectrometry: an evaluation of global selectivity as a function of mass resolving power and extraction window, with comparison of centroid and prof

1 reference

https://pubmed.ncbi.nlm.nih.gov/23733317

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated 2D peptide separation on a 1D nano-LC-MS system

1 reference

https://pubmed.ncbi.nlm.nih.gov/23733317

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PMIC.201300022

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

7 September 2017

ResearchGate publication ID

0 references

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