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Quantitative, high-resolution proteomics for data-driven systems biology

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Europe PubMed Central

29 July 2017

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Europe PubMed Central

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Quantitative, high-resolution proteomics for data-driven systems biology (English)

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stated in

Europe PubMed Central

29 July 2017

1

Jürgen Cox

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stated in

Europe PubMed Central

29 July 2017

2

Matthias Mann

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stated in

Europe PubMed Central

29 July 2017

1 January 2011

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stated in

Europe PubMed Central

29 July 2017

27

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based on heuristic

inferred from page(s)

published in

Annual Review of Biochemistry

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stated in

Europe PubMed Central

29 July 2017

80

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Europe PubMed Central

29 July 2017

273-299

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Europe PubMed Central

29 July 2017

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24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Interpretation of shotgun proteomic data: the protein inference problem

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Higher-energy C-trap dissociation for peptide modification analysis.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Performance evaluation of a high-field Orbitrap mass analyzer

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Analysis of protein complexes using mass spectrometry

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Identifying the proteins to which small-molecule probes and drugs bind in cells

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Positive selection of tyrosine loss in metazoan evolution.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

De novo peptide sequencing and identification with precision mass spectrometry

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

A global protein kinase and phosphatase interaction network in yeast.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Accurate quantitation of protein expression and site-specific phosphorylation

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

A new logic for DNA engineering using recombination in Escherichia coli

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Global analysis of protein localization in budding yeast

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Proteomics reveals N-linked glycoprotein diversity in Caenorhabditis elegans and suggests an atypical translocation mechanism for integral membrane proteins.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

From information to knowledge: new technologies for defining gene function

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Quantitative proteomics: a tool to assess cell differentiation

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Toward a high-resolution view of nuclear dynamics

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

The language of covalent histone modifications

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Reading protein modifications with interaction domains

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Mass spectrometry and protein analysis

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Unrestrictive identification of post-translational modifications through peptide mass spectrometry

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Proteomics analysis of the nucleolus in adenovirus-infected cells

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Large-scale characterization of HeLa cell nuclear phosphoproteins

2 references

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1073/PNAS.0404720101

FLEXIQuant: a novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Proteomics strategy for quantitative protein interaction profiling in cell extracts.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

The language of histone crosstalk

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

A quantitative proteomics analysis of subcellular proteome localization and changes induced by DNA damage.

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Proteome analysis of yeast response to various nutrient limitations

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

A protein domain-based interactome network for C. elegans early embryogenesis

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Gene expression profiling predicts clinical outcome of breast cancer

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Non-functional phosphorylations?

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Analysis of quantitative proteomic data generated via multidimensional protein identification technology

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Distinguishing protein-coding and noncoding genes in the human genome

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

A genecentric Human Protein Atlas for expression profiles based on antibodies

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1146/ANNUREV-BIOCHEM-061308-093216

Identifiers

DOI

10.1146/ANNUREV-BIOCHEM-061308-093216

1 reference

stated in

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

PubMed ID

21548781

retrieved

29 July 2017

ResearchGate publication ID

51104233

0 references

(Q33891413)

Quantitative, high-resolution proteomics for data-driven systems biology

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