(Q38904186)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25735769%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

Logical transformation of genome-scale metabolic models for gene level applications and analysis (English)

1 reference

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2 March 2020

4

1 reference

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2 March 2020

Cheng Zhang

1

1 reference

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2 March 2020

Boyang Ji

2

1 reference

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2 March 2020

author name string

Adil Mardinoglu

3

1 reference

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2 March 2020

Qiang Hua

5

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2 March 2020

language of work or name

English

0 references

publication date

2 March 2015

1 reference

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2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25735769%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

volume

31

1 reference

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2 March 2020

issue

14

1 reference

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2 March 2020

page(s)

2324-2331

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25735769%20AND%20SRC:MED&resulttype=core&format=json

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

2 March 2020

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Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling

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Revising the Representation of Fatty Acid, Glycerolipid, and Glycerophospholipid Metabolism in the Consensus Model of Yeast Metabolism

21 January 2018

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Network medicine: a network-based approach to human disease

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Context-specific metabolic networks are consistent with experiments

21 January 2018

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shRNA libraries and their use in cancer genetics

21 January 2018

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Improved vanillin production in baker's yeast through in silico design

21 January 2018

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Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

21 January 2018

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Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.

21 January 2018

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Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease

21 January 2018

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In silico identification of gene amplification targets for improvement of lycopene production

21 January 2018

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A hybrid of ant colony optimization and minimization of metabolic adjustment to improve the production of succinic acid in Escherichia coli.

21 January 2018

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A hybrid of bees algorithm and flux balance analysis with OptKnock as a platform for in silico optimization of microbial strains

21 January 2018

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Truncated branch and bound achieves efficient constraint-based genetic design

21 January 2018

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The biomass objective function

21 January 2018

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A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

21 January 2018

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Fatty acid synthase as a potential therapeutic target in cancer

21 January 2018

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Increased malonyl coenzyme A biosynthesis by tuning the Escherichia coli metabolic network and its application to flavanone production

21 January 2018

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Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models.

21 January 2018

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Plasticity of genetic interactions in metabolic networks of yeast

21 January 2018

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Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks

21 January 2018

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Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality

21 January 2018

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Genome-wide analysis of redox reactions reveals metabolic engineering targets for D-lactate overproduction in Escherichia coli.

21 January 2018

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OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains

21 January 2018

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Large-scale identification of genetic design strategies using local search

21 January 2018

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Integration of clinical data with a genome-scale metabolic model of the human adipocyte

21 January 2018

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Genome-scale modeling of human metabolism - a systems biology approach

21 January 2018

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Systems medicine and metabolic modelling

21 January 2018

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New paradigms for metabolic modeling of human cells

21 January 2018

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Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

21 January 2018

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Engineering strategy of yeast metabolism for higher alcohol production

21 January 2018

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A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks

21 January 2018

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Model based engineering of Pichia pastoris central metabolism enhances recombinant protein production

21 January 2018

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What is flux balance analysis?

21 January 2018

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Evolutionary programming as a platform for in silico metabolic engineering

21 January 2018

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An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems

21 January 2018

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Microbial 1-butanol production: Identification of non-native production routes and in silico engineering interventions

21 January 2018

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OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions

21 January 2018

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An integrated computational and experimental study for overproducing fatty acids in Escherichia coli.

21 January 2018

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

21 January 2018

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Flux imbalance analysis and the sensitivity of cellular growth to changes in metabolite pools

21 January 2018

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DAISY: picking synthetic lethals from cancer genomes

21 January 2018

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

21 January 2018

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Genome-scale gene/reaction essentiality and synthetic lethality analysis

21 January 2018

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Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load

21 January 2018

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Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA.

21 January 2018

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A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration

21 January 2018

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Dysregulated lipid metabolism in cancer

21 January 2018

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Tumor-selective action of HDAC inhibitors involves TRAIL induction in acute myeloid leukemia cells

21 January 2018

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10.1093/BIOINFORMATICS/BTV134

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25735769%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/ZhangJMNH15

2 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25735769%20AND%20SRC:MED&resulttype=core&format=json