(Q38978225)

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Integrated analysis of RNA-binding protein complexes using in vitro selection and high-throughput sequencing and sequence specificity landscapes (SEQRS).

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scholarly article

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

Integrated analysis of RNA-binding protein complexes using in vitro selection and high-throughput sequencing and sequence specificity landscapes (SEQRS). (English)

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

1 reference

based on heuristic

inferred from title

RNA-binding proteins

1 reference

based on heuristic

inferred from title

high-throughput sequencing

1 reference

based on heuristic

inferred from title

Chase A Weidmann

object named as

Chase A Weidmann

2

0 references

Zachary T Campbell

object named as

Zachary T Campbell

6

0 references

author name string

Tzu-Fang Lou

1

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

Jordan Killingsworth

3

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

Traci M Tanaka Hall

4

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

Aaron C Goldstrohm

5

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

publication date

8 October 2016

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

118-119

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

171-181

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio.

1 reference

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17 June 2018

The Overlooked Fact: Fundamental Need for Spike-In Control for Virtually All Genome-Wide Analyses

1 reference

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17 June 2018

Combinatorial Control of mRNA Fates by RNA-Binding Proteins and Non-Coding RNAs

1 reference

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17 June 2018

RNA regulatory networks diversified through curvature of the PUF protein scaffold

1 reference

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17 June 2018

RNA Bind-n-Seq: Measuring the Binding Affinity Landscape of RNA-Binding Proteins

1 reference

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17 June 2018

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition

1 reference

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17 June 2018

Probing RNA-protein networks: biochemistry meets genomics

1 reference

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17 June 2018

A protein-RNA specificity code enables targeted activation of an endogenous human transcript

1 reference

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17 June 2018

The RNA binding domain of Pumilio antagonizes poly-adenosine binding protein and accelerates deadenylation.

1 reference

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17 June 2018

Principles and properties of eukaryotic mRNPs

1 reference

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17 June 2018

A compendium of RNA-binding motifs for decoding gene regulation.

1 reference

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17 June 2018

DNA-binding specificities of human transcription factors

1 reference

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17 June 2018

RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans

1 reference

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17 June 2018

Human Pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs

1 reference

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17 June 2018

Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity

1 reference

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17 June 2018

Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site

1 reference

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17 June 2018

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Drosophila Pumilio protein contains multiple autonomous repression domains that regulate mRNAs independently of Nanos and brain tumor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Sequence-specificity and energy landscapes of DNA-binding molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Specificity landscapes of DNA binding molecules elucidate biological function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Genome-wide analysis of mRNA targets for Caenorhabditis elegans FBF, a conserved stem cell regulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Enzymatic assembly of DNA molecules up to several hundred kilobases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

FBF and its dual control of gld-1 expression in the Caenorhabditis elegans germline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Quantitative analysis of protein-RNA interactions by gel mobility shift

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

A combinatorial code for CPE-mediated translational control

1 reference

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17 June 2018

Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts.

1 reference

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17 June 2018

MEME: discovering and analyzing DNA and protein sequence motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

A mutation in T7 RNA polymerase that facilitates promoter clearance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Modular recognition of RNA by a human pumilio-homology domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Crystal structure of a Pumilio homology domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Structure of Pumilio reveals similarity between RNA and peptide binding motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Recruitment of Nanos to hunchback mRNA by Pumilio

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

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A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

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A CCHC metal-binding domain in Nanos is essential for translational regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Binding of pumilio to maternal hunchback mRNA is required for posterior patterning in Drosophila embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

17 June 2018

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

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The Drosophila posterior-group gene nanos functions by repressing hunchback activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

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Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

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RNA regulatory elements mediate control of Drosophila body pattern by the posterior morphogen nanos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

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In vitro selection of RNA molecules that bind specific ligands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

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Cooperative Interactions of Hemoglobin

1 reference

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A guide to design and optimization of reporter assays for 3' untranslated region mediated regulation of mammalian messenger RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

21 August 2018

PUF protein-mediated deadenylation is catalyzed by Ccr4p.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

21 August 2018

A census of human RNA-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5385160

2 December 2018

Multifunctional deadenylase complexes diversify mRNA control

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2016.10.001

7 January 2021

Two yeast PUF proteins negatively regulate a single mRNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2016.10.001

7 January 2021

STUDIES ON THE RELATIONS BETWEEN MOLECULAR AND FUNCTIONAL PROPERTIES OF HEMOGLOBIN. IV. THE BOHR EFFECT IN HUMAN HEMOGLOBIN MEASURED BY PROTON BINDING

1 reference

https://pubmed.ncbi.nlm.nih.gov/27729296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.YMETH.2016.10.001

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

1 reference

Europe PubMed Central

7 June 2018

http://europepmc.org/abstract/PMC/5385160

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