(Q39033381)

3 June 2018

title

A Strategy to Combine Sample Multiplexing with Targeted Proteomics Assays for High-Throughput Protein Signature Characterization (English)

1 reference

3 June 2018

author

Martin Wühr

7

1 reference

PubMed publication ID

8 September 2017

Brian K Erickson

1

0 references

Christopher M Rose

object named as

Christopher M Rose

2

0 references

Steven P. Gygi

10

object named as

Steven P Gygi

1 reference

3 June 2018

author name string

Craig R Braun

3

1 reference

3 June 2018

Alison R Erickson

4

1 reference

3 June 2018

Jeffrey Knott

5

1 reference

3 June 2018

Graeme C McAlister

6

1 reference

3 June 2018

Joao A Paulo

8

1 reference

3 June 2018

Robert A Everley

9

1 reference

3 June 2018

publication date

5 January 2017

1 reference

3 June 2018

published in

Molecular Cell

1 reference

3 June 2018

volume

65

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3 June 2018

issue

2

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3 June 2018

page(s)

361-370

1 reference

3 June 2018

Defining the consequences of genetic variation on a proteome-wide scale.

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Generation of multiple reporter ions from a single isobaric reagent increases multiplexing capacity for quantitative proteomics.

17 June 2018

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Malaria. A forward genetic screen identifies erythrocyte CD55 as essential for Plasmodium falciparum invasion

17 June 2018

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Large-Scale Targeted Proteomics Using Internal Standard Triggered-Parallel Reaction Monitoring (IS-PRM).

17 June 2018

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MARQUIS: a multiplex method for absolute quantification of peptides and posttranslational modifications

17 June 2018

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Evaluating multiplexed quantitative phosphopeptide analysis on a hybrid quadrupole mass filter/linear ion trap/orbitrap mass spectrometer

17 June 2018

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17 June 2018

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MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes.

17 June 2018

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Intelligent data acquisition blends targeted and discovery methods

17 June 2018

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Simplified and efficient quantification of low-abundance proteins at very high multiplex via targeted mass spectrometry

17 June 2018

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Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

17 June 2018

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Global chromatin profiling reveals NSD2 mutations in pediatric acute lymphoblastic leukemia

17 June 2018

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Global proteome analysis of the NCI-60 cell line panel

17 June 2018

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Systems analysis of the NCI-60 cancer cell lines by alignment of protein pathway activation modules with "-OMIC" data fields and therapeutic response signatures

17 June 2018

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Doxorubicin: an update on anticancer molecular action, toxicity and novel drug delivery systems.

17 June 2018

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Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

17 June 2018

1 reference

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Instant spectral assignment for advanced decision tree-driven mass spectrometry

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Using iRT, a normalized retention time for more targeted measurement of peptides

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

A tissue-specific atlas of mouse protein phosphorylation and expression

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Index-ion triggered MS2 ion quantification: a novel proteomics approach for reproducible detection and quantification of targeted proteins in complex mixtures

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Analysis of Food and Drug Administration-approved anticancer agents in the NCI60 panel of human tumor cell lines

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Targeted data acquisition for improved reproducibility and robustness of proteomic mass spectrometry assays

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

17 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Integrative analysis of proteomic signatures, mutations, and drug responsiveness in the NCI 60 cancer cell line set

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Glucosamine suppresses proliferation of human prostate carcinoma DU145 cells through inhibition of STAT3 signaling

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Detection of an elevated HER2 expression in MCF-7 breast cancer cells overexpressing estrogen receptor beta1.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

The NCI60 human tumour cell line anticancer drug screen

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Expression of focal adhesion kinase in acute myeloid leukemia is associated with enhanced blast migration, increased cellularity, and poor prognosis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Constitutive activation of Stat3 in human prostate tumors and cell lines: direct inhibition of Stat3 signaling induces apoptosis of prostate cancer cells

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Increasing throughput in targeted proteomics assays: 54-plex quantitation in a single mass spectrometry run.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5250569

Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28065596

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2016.12.005

1 reference

3 June 2018

PMC publication ID

5250569

1 reference

3 June 2018

PubMed publication ID

28065596

1 reference

3 June 2018