(Q39044490)

2 July 2019

title

The on-again, off-again relationship between mitochondrial genomes and species boundaries (English)

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2 July 2019

author

Justin C Havird

series ordinal

2

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author name string

Daniel B Sloan

series ordinal

1

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2 July 2019

Joel Sharbrough

series ordinal

3

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2 July 2019

language of work or name

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27 January 2017

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2 July 2019

published in

Molecular Ecology

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2 July 2019

volume

26

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2 July 2019

issue

8

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2 July 2019

page(s)

2212-2236

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2 July 2019

Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts.

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An epistatic mating system model can produce permanent cytonuclear disequilibria in a hybrid zone

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Population size does not influence mitochondrial genetic diversity in animals

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The costs of being male: are there sex-specific effects of uniparental mitochondrial inheritance?

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High levels of mitochondrial DNA deletions in substantia nigra neurons in aging and Parkinson disease

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Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole

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The relation between the neutrality index for mitochondrial genes and the distribution of mutational effects on fitness

21 January 2018

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Effects of linkage on rates of molecular evolution

21 January 2018

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Functional conservatism in mitochondrial evolution: insight from hybridization of arctic and brook charrs

21 January 2018

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On the adaptive value of cytoplasmic genomes in plants

21 January 2018

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Accelerated mitochondrial evolution and "Darwin's corollary": asymmetric viability of reciprocal F1 hybrids in Centrarchid fishes

21 January 2018

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Animal mitochondrial genomes

21 January 2018

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Introgression of mitochondrial DNA among Myodes voles: consequences for energetics?

21 January 2018

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Rapid evolution of animal mitochondrial DNA

21 January 2018

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Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists

21 January 2018

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The Eukaryotic Tree of Life from a Global Phylogenomic Perspective

21 January 2018

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A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities?

21 January 2018

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The Mitochondrial Proteome and Human Disease

21 January 2018

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Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia.

21 January 2018

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Mitochondria, maternal inheritance, and male aging

21 January 2018

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Evolutionary patterns of the mitochondrial genome in Metazoa: exploring the role of mutation and selection in mitochondrial protein coding genes

21 January 2018

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Mitochondrial-Nuclear Epistasis Impacts Fitness and Mitochondrial Physiology of Interpopulation Caenorhabditis briggsae Hybrids

21 January 2018

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Multiple molecular mechanisms cause reproductive isolation between three yeast species

21 January 2018

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Uniparental Inheritance Promotes Adaptive Evolution in Cytoplasmic Genomes.

21 January 2018

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Selfish little circles: transmission bias and evolution of large deletion-bearing mitochondrial DNA in Caenorhabditis briggsae nematodes.

21 January 2018

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21 January 2018

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On the evolution of RNA editing

21 January 2018

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Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

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High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans.

21 January 2018

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Interactions between nuclear genes and a foreign mitochondrial genome in the redbelly dace Chrosomus eos.

21 January 2018

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A meta-analysis of the strength and nature of cytoplasmic genetic effects

21 January 2018

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Temperature-specific outcomes of cytoplasmic-nuclear interactions on egg-to-adult development time in seed beetles.

21 January 2018

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Intergenomic epistasis for fitness: within-population interactions between cytoplasmic and nuclear genes in Drosophila melanogaster

21 January 2018

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Evolutionary implications of non-neutral mitochondrial genetic variation

21 January 2018

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Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

21 January 2018

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Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.

21 January 2018

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Cytonuclear conflict in interpopulation hybrids: the role of RNA polymerase in mtDNA transcription and replication.

21 January 2018

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Hybrid breakdown and mitochondrial dysfunction in hybrids of Nasonia parasitoid wasps

21 January 2018

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Hybridization as a stimulus for the evolution of invasiveness in plants?

21 January 2018

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Do mitochondrial properties explain intraspecific variation in thermal tolerance?

21 January 2018

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A cytonuclear incompatibility causes anther sterility in Mimulus hybrids.

21 January 2018

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Mitochondria and male disease.

21 January 2018

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Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

21 January 2018

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Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA

21 January 2018

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Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American Eels

21 January 2018

1 reference

Mitochondrial DNA as a marker of molecular diversity: a reappraisal.

21 January 2018

1 reference

"Darwin's corollary" and cytoplasmic incompatibility induced by Cardinium may contribute to speciation in Encarsia wasps (Hymenoptera: Aphelinidae).

21 January 2018

1 reference

Mother's curse: the effect of mtDNA on individual fitness and population viability

21 January 2018

1 reference

Mitochondrial bioenergetics as a major motive force of speciation.

21 January 2018

1 reference

Disrupting mitochondrial-nuclear coevolution affects OXPHOS complex I integrity and impacts human health.

21 January 2018

1 reference

The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco

21 January 2018

1 reference

Negligible nuclear introgression despite complete mitochondrial capture between two species of chipmunks

21 January 2018

1 reference

21 January 2018

Mitochondrial evolution.

1 reference

On the evolutionary origin of the plant mitochondrion and its genome

21 January 2018

1 reference

The role of plastids in plant speciation.

21 January 2018

1 reference

Sex ratio and unisexual sterility in hybrid animals

21 January 2018

1 reference

Aphid genome expression reveals host-symbiont cooperation in the production of amino acids

21 January 2018

1 reference

Animal mitochondrial DNA as a genetic marker in population and evolutionary biology

21 January 2018

1 reference

Tracing hybrid incompatibilities to single amino acid substitutions

21 January 2018

1 reference

Hybridization, introgression, and the nature of species boundaries.

21 January 2018

1 reference

Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

21 January 2018

1 reference

The Roles of Mutation, Selection, and Expression in Determining Relative Rates of Evolution in Mitochondrial versus Nuclear Genomes

21 January 2018

1 reference

Conservative and compensatory evolution in oxidative phosphorylation complexes of angiosperms with highly divergent rates of mitochondrial genome evolution

21 January 2018

1 reference

Sex, Mitochondria, and Genetic Rescue.

21 January 2018

1 reference

Pentatricopeptide repeat proteins constrain genome evolution in chloroplasts

21 January 2018

1 reference

21 January 2018

1 reference

Mitonuclear coevolution as the genesis of speciation and the mitochondrial DNA barcode gap

21 January 2018

1 reference

The mitonuclear compatibility hypothesis of sexual selection.

21 January 2018

1 reference

Pleiotropic effects of a mitochondrial-nuclear incompatibility depend upon the accelerating effect of temperature in Drosophila

21 January 2018

1 reference

Recurrent loss of sex is associated with accumulation of deleterious mutations in Oenothera

21 January 2018

1 reference

Do relaxed selection and habitat temperature facilitate biased mitogenomic introgression in a narrowly endemic fish?

21 January 2018

1 reference

Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts

21 January 2018

1 reference

Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis

21 January 2018

1 reference

Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis

21 January 2018

1 reference

Direct and indirect genetic effects of sex-specific mitonuclear epistasis on reproductive ageing

21 January 2018

1 reference

Experimental evidence supports a sex-specific selective sieve in mitochondrial genome evolution.

21 January 2018

1 reference

The rate of adaptive evolution in animal mitochondria.

21 January 2018

1 reference

Muller's ratchet and the degeneration of the Drosophila miranda neo-Y chromosome

21 January 2018

1 reference

Molecular Chaperon Produced by an Intracellular Symbiont1

21 January 2018

1 reference

Mitochondrial DNA variants mediate energy production and expression levels for CFH, C3 and EFEMP1 genes: implications for age-related macular degeneration

21 January 2018

1 reference

Rewiring the keyboard: evolvability of the genetic code

21 January 2018

1 reference

Mitochondrial DNA deletions are abundant and cause functional impairment in aged human substantia nigra neurons.

21 January 2018

1 reference

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

21 January 2018

1 reference

The consequences of genetic drift for bacterial genome complexity

21 January 2018

1 reference

Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages.

21 January 2018

1 reference

Extensive Mitochondrial mRNA Editing and Unusual Mitochondrial Genome Organization in Calcaronean Sponges

21 January 2018

1 reference

Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species.

21 January 2018

1 reference

Individual performance in relation to cytonuclear discordance in a northern contact zone between long-toed salamander (Ambystoma macrodactylum) lineages.

21 January 2018

1 reference

Comparative analysis of structural diversity and sequence evolution in plant mitochondrial genes transferred to the nucleus

21 January 2018

1 reference

Sequential adaptive introgression of the mitochondrial genome in Drosophila yakuba and Drosophila santomea

21 January 2018

1 reference

Nonconcordant evolutionary history of maternal and paternal lineages in Adriatic sturgeon.

21 January 2018

1 reference

Mutation accumulation in transfer RNAs: molecular evidence for Muller's ratchet in mitochondrial genomes

21 January 2018

1 reference

Mutation Accumulation and the Extinction of Small Populations

21 January 2018

1 reference

Mutation pressure and the evolution of organelle genomic architecture

21 January 2018

1 reference

A genome-wide view of the spectrum of spontaneous mutations in yeast.

21 January 2018

1 reference

Purifying selection in mitochondria, free-living and obligate intracellular proteobacteria.

21 January 2018

1 reference

Adaptive protein evolution at the Adh locus in Drosophila

21 January 2018

1 reference

Mitochondrial introgression and incomplete lineage sorting through space and time: phylogenetics of crotaphytid lizards.

21 January 2018

1 reference

The causes of mitochondrial DNA gene tree paraphyly in birds

21 January 2018

1 reference

Steep, coincident, and concordant clines in mitochondrial and nuclear-encoded genes in a hybrid zone between subspecies of Atlantic killifish, Fundulus heteroclitus

21 January 2018

1 reference

An Incompatibility between a mitochondrial tRNA and its nuclear-encoded tRNA synthetase compromises development and fitness in Drosophila

21 January 2018

1 reference

Invasion from the cold past: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia

21 January 2018

1 reference

A mitochondrial genome sequence of a hominin from Sima de los Huesos

21 January 2018

1 reference

Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins

21 January 2018

1 reference

Natural selection shaped regional mtDNA variation in humans

21 January 2018

1 reference

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

21 January 2018

1 reference

Accelerated evolution and Muller's rachet in endosymbiotic bacteria

21 January 2018

1 reference

The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria

21 January 2018

1 reference

Mitonuclear Epistasis for Development Time and Its Modification by Diet in Drosophila

21 January 2018

1 reference

Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.

21 January 2018

1 reference

THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE

21 January 2018

1 reference

The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

21 January 2018

1 reference

High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes

21 January 2018

1 reference

The causes of mutation accumulation in mitochondrial genomes

21 January 2018

1 reference

Accelerated mutation accumulation in asexual lineages of a freshwater snail

21 January 2018

1 reference

Cytonuclear genic incompatibilities cause increased mortality in male F2 hybrids of Nasonia giraulti and N. vitripennis

21 January 2018

1 reference

Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora

21 January 2018

1 reference

Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp nasonia (hymenoptera: pteromalidae).

21 January 2018

1 reference

Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome C oxidase complex.

21 January 2018

1 reference

Mitochondrial-nuclear epistasis contributes to phenotypic variation and coadaptation in natural isolates of Saccharomyces cerevisiae

21 January 2018

1 reference

Animal mitochondria, positive selection and cyto-nuclear coevolution: insights from pulmonates

21 January 2018

1 reference

Biased introgression of mitochondrial and nuclear genes: a comparison of diploid and haplodiploid systems.

21 January 2018

1 reference

A genomic perspective on hybridization and speciation

21 January 2018

1 reference

Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)

21 January 2018

1 reference

Gene flow and species delimitation

21 January 2018

1 reference

Cytonuclear Interactions in the Evolution of Animal Mitochondrial tRNA Metabolism

21 January 2018

1 reference

Selfish Mitochondrial DNA Proliferates and Diversifies in Small, but not Large, Experimental Populations of Caenorhabditis briggsae.

21 January 2018

1 reference

Extensive mitochondrial introgression in North American Great Black-backed Gulls (Larus marinus) from the American Herring Gull (Larus smithsonianus) with little nuclear DNA impact

21 January 2018

1 reference

The genomic trajectory of hybrid swarms: outcomes of repeated crosses between populations of Tigriopus californicus

21 January 2018

1 reference

Mitigating mutational meltdown in mammalian mitochondria

21 January 2018

1 reference

Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans

21 January 2018

1 reference

Cytonuclear coevolution: the genomics of cooperation

21 January 2018

1 reference

Genetic history of an archaic hominin group from Denisova Cave in Siberia

21 January 2018

1 reference

Medicine. Mitochondrial replacement, evolution, and the clinic.

21 January 2018

1 reference

The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

21 January 2018

1 reference

Evolution: replacing genes and traits through hybridization

21 January 2018

1 reference

Positive Selection in Rapidly Evolving Plastid-Nuclear Enzyme Complexes

21 January 2018

1 reference

Cytonuclear coadaptation in Drosophila: disruption of cytochrome c oxidase activity in backcross genotypes

21 January 2018

1 reference

Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids

21 January 2018

1 reference

Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability

21 January 2018

1 reference

Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects

21 January 2018

1 reference

Cytonuclear interactions and relaxed selection accelerate sequence evolution in organelle ribosomes

21 January 2018

1 reference

Mitonuclear linkage disequilibrium in human populations.

21 January 2018

1 reference

Parallel Structural Evolution of Mitochondrial Ribosomes and OXPHOS Complexes

21 January 2018

1 reference

Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes

21 January 2018

1 reference

Strong purifying selection in transmission of mammalian mitochondrial DNA

21 January 2018

1 reference

On the possibility of constructive neutral evolution

21 January 2018

1 reference

Conflicting levels of selection in the accumulation of mitochondrial defects in Saccharomyces cerevisiae

21 January 2018

1 reference

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

21 January 2018

1 reference

The biogeography of mitochondrial and nuclear discordance in animals

21 January 2018

1 reference

Unveiling the molecular arms race between two conflicting genomes in cytoplasmic male sterility?

21 January 2018

1 reference

Evidence for mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species

21 January 2018

1 reference

Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex.

21 January 2018

1 reference

Asymmetric postmating isolation: Darwin's corollary to Haldane's rule

21 January 2018

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Inheritance of the fittest mitochondria in yeast

21 January 2018

1 reference

Nuclear-mitochondrial epistasis: a gene's eye view of genomic conflict

21 January 2018

1 reference

Losing the stem-loop structure from metazoan mitochondrial tRNAs and co-evolution of interacting factors

21 January 2018

1 reference

Divergence and polymorphism under the nearly neutral theory of molecular evolution.

21 January 2018

1 reference

Plastid-Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae

21 January 2018

1 reference

Wolbachia: master manipulators of invertebrate biology

21 January 2018

1 reference

RELAX: detecting relaxed selection in a phylogenetic framework

21 January 2018

1 reference

Genetic rescue to the rescue

21 January 2018

1 reference

Quantifying the elevation of mitochondrial DNA evolutionary substitution rates over nuclear rates in the intertidal copepod Tigriopus californicus.

21 January 2018

1 reference

Evolution of interacting proteins in the mitochondrial electron transport system in a marine copepod.

21 January 2018

1 reference

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

21 January 2018

1 reference

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

In vivo male fertility is affected by naturally occurring mitochondrial haplotypes

21 January 2018

1 reference

Mitochondrial-nuclear interactions: compensatory evolution or variable functional constraint among vertebrate oxidative phosphorylation genes?

21 January 2018

1 reference

Coordinated rates of evolution between interacting plastid and nuclear genes in Geraniaceae

21 January 2018

1 reference

Coevolution between Nuclear-Encoded DNA Replication, Recombination, and Repair Genes and Plastid Genome Complexity

21 January 2018

1 reference

G×G×E for lifespan in Drosophila: mitochondrial, nuclear, and dietary interactions that modify longevity

21 January 2018

1 reference

Compatibility between mitochondrial and nuclear genomes correlates with the quantitative trait of lifespan in Caenorhabditis elegans

21 January 2018

1 reference

No evidence for nuclear introgression despite complete mtDNA replacement in the Carpathian newt (Lissotriton montandoni).

21 January 2018

1 reference

LEAKY PREZYGOTIC ISOLATION AND POROUS GENOMES: RAPID INTROGRESSION OF MATERNALLY INHERITED DNA

21 January 2018

1 reference

Mitochondrial mutations may decrease population viability

21 January 2018

1 reference

Restoration of genetic variation lost – the genetic rescue hypothesis

21 January 2018

1 reference

Purifying Selection in Mammalian Mitochondrial Protein-Coding Genes Is Highly Effective and Congruent with Evolution of Nuclear Genes

21 January 2018

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21 January 2018

Irremediable Complexity?

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The molecular basis of cytoplasmic male sterility and fertility restoration

21 January 2018

1 reference

The Sex Specific Genetic Variation of Energetics in Bank Voles, Consequences of Introgression?

21 January 2018

1 reference

Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes.

21 January 2018

1 reference

12 December 2020

Male-Killing Wolbachia and Mitochondrial DNA: Selective Sweeps, Hybrid Introgression and Parasite Population Dynamics

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12 December 2020

Nuclear-mitochondrial epistasis for fitness in Saccharomyces cerevisiae

1 reference

12 December 2020

Disruption of mitochondrial function in interpopulation hybrids of Tigriopus californicus

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12 December 2020

The hidden side of invasions: massive introgression by local genes

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12 December 2020

The use of chloroplast DNA polymorphism in studies of gene flow in plants

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12 December 2020

Extreme genome reduction in symbiotic bacteria

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12 December 2020

Low metabolic rates in salamanders are correlated with weak selective constraints on mitochondrial genes

1 reference

12 December 2020

Post-zygotic sterility and cytonuclear compatibility limits in S. cerevisiae xenomitochondrial cybrids.

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12 December 2020

Genomics of hybridization and its evolutionary consequences

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12 December 2020

The effects of assortative mating and migration on cytonuclear associations in hybrid zones.

1 reference

12 December 2020

EXPERIMENTAL EVIDENCE FOR MITOCHONDRIAL DNA INTROGRESSION BETWEEN DROSOPHILA SPECIES.

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12 December 2020

The evolutionary advantage of recombination

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12 December 2020

The effect of linkage on limits to artificial selection

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12 December 2020

Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

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12 December 2020

The population genetics of speciation: the evolution of hybrid incompatibilities

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12 December 2020

A ruby in the rubbish: beneficial mutations, deleterious mutations and the evolution of sex

1 reference

12 December 2020

Dobzhansky, Bateson, and the genetics of speciation

1 reference

12 December 2020

Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes

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12 December 2020

Decreased physical performance of congenic mice with mismatch between the nuclear and the mitochondrial genome

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12 December 2020

The effects of unidirectional incompatibility on cytonuclear disequilibria in a hybrid zone

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12 December 2020

Deleterious mutation accumulation in organelle genomes

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12 December 2020

Deleterious mutations in animal mitochondrial DNA

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12 December 2020

Plastome engineering of ribulose-1,5-bisphosphate carboxylase/oxygenase in tobacco to form a sunflower large subunit and tobacco small subunit hybrid

1 reference

12 December 2020

Identifiers

DOI

10.1111/MEC.13959

1 reference

2 July 2019

PMC publication ID

6534505

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2 July 2019

PubMed publication ID

27997046

1 reference

2 July 2019