(Q37677310)

English

Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)

scientific article published on March 2014

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages) (English)

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

object named as

Chromera velia

1 reference

based on heuristic

inferred from title

object named as

Denis Baurain

6

0 references

object named as

Boyke Bunk

4

0 references

author name string

Jörn Petersen

1

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Ann-Kathrin Ludewig

2

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Victoria Michael

3

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Michael Jarek

5

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Henner Brinkmann

7

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

publication date

1 March 2014

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Genome Biology and Evolution

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

6

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

3

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

666-684

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The Revised Classification of Eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

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The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

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Multiple plastids collected by the dinoflagellate Dinophysis mitra through kleptoplastidy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

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Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

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Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms

1 reference

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Riboneogenesis in Yeast

1 reference

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Do red and green make brown?: perspectives on plastid acquisitions within chromalveolates

1 reference

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23 August 2017

Genome evolution of a tertiary dinoflagellate plastid

1 reference

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Scaffolding pre-assembled contigs using SSPACE

1 reference

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After the primary endosymbiosis: an update on the chromalveolate hypothesis and the origins of algae with Chl c

1 reference

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A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum

1 reference

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23 August 2017

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data

1 reference

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23 August 2017

Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Genetic evidence that an endosymbiont-derived endoplasmic reticulum-associated protein degradation (ERAD) system functions in import of apicoplast proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Genomic footprints of a cryptic plastid endosymbiosis in diatoms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The puzzle of plastid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Theileria apicoplast as a target for chemotherapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis

1 reference

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23 August 2017

Toxoplasma gondii Tic20 is essential for apicoplast protein import

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The eukaryotic tree of life: endosymbiosis takes its TOL.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

An improved general amino acid replacement matrix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Plastid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

A photosynthetic alveolate closely related to apicomplexan parasites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Origin and distribution of Calvin cycle fructose and sedoheptulose bisphosphatases in plantae and complex algae: a single secondary origin of complex red plastids and subsequent propagation via tertiary endosymbioses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The katablepharids are a distant sister group of the Cryptophyta: A proposal for Katablepharidophyta divisio nova/ Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Tropical infectious diseases: metabolic maps and functions of the Plasmodium falciparum apicoplast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

One, two, three: nature's tool box for building plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The highly reduced genome of an enslaved algal nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Phylogenetic analyses indicate that the 19'Hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: origins via duplication rather than prokaryote-eukaryote divergence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

23 August 2017

Three old and one new: protein import into red algal-derived plastids surrounded by four membranes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

6 September 2017

Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

6 September 2017

The search for the missing link: a relic plastid in Perkinsus?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

6 September 2017

Cdc48: a power machine in protein degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

6 September 2017

Making new out of old: recycling and modification of an ancient protein translocation system during eukaryotic evolution. Mechanistic comparison and phylogenetic analysis of ERAD, SELMA and the peroxisomal importomer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

6 September 2017

Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

6 September 2017

MUST, a computer package of Management Utilities for Sequences and Trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

6 September 2017

Organelle genomes: going, going, gone!

1 reference

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28 September 2017

Reevaluating the green contribution to diatom genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

25 June 2018

ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

25 June 2018

Tracing the Thread of Plastid Diversity through the Tapestry of Life.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

25 June 2018

Determinants of coenzyme specificity in glyceraldehyde-3-phosphate dehydrogenase: role of the acidic residue in the fingerprint region of the nucleotide binding fold.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

25 June 2018

A nuclear-encoded form II RuBisCO in dinoflagellates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

25 June 2018

Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin

1 reference

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1 September 2018

Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens--new impetus for studying alveolates

1 reference

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1 September 2018

Protein targeting into complex diatom plastids: functional characterisation of a specific targeting motif.

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1 September 2018

Der1-mediated preprotein import into the periplastid compartment of chromalveolates?

1 reference

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1 September 2018

Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids.

1 reference

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1 September 2018

A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

1 September 2018

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

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1 September 2018

Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.

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1 September 2018

Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids

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1 September 2018

Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin for sporozoan and dinoflagellate plastids

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1 September 2018

Single gene circles in dinoflagellate chloroplast genomes

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1 September 2018

The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3971594

1 September 2018

Evolutionary origin of cryptomonad microalgae: two novel chloroplast/cytosol-specific GAPDH genes as potential markers of ancestral endosymbiont and host cell components

1 reference

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1 September 2018

Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids.

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1 September 2018

PHYLOGENETIC EVIDENCE FOR THE CRYPTOPHYTE ORIGIN OF THE PLASTID OF DINOPHYSIS (DINOPHYSIALES, DINOPHYCEAE)1

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https://api.crossref.org/works/10.1093%2FGBE%2FEVU043

21 January 2018

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES(1).

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https://api.crossref.org/works/10.1093%2FGBE%2FEVU043

21 January 2018

Bridge over troublesome plastids

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https://api.crossref.org/works/10.1093%2FGBE%2FEVU043

21 January 2018

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU043

21 January 2018

Plastid ultrastructure defines the protein import pathway in dinoflagellates

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU043

21 January 2018

Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)?

1 reference

https://pubmed.ncbi.nlm.nih.gov/24572015

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromalveolate plastids: direct descent or multiple endosymbioses?

1 reference

https://pubmed.ncbi.nlm.nih.gov/24572015

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic understanding of dinoflagellates

1 reference

https://pubmed.ncbi.nlm.nih.gov/24572015

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/GBE/EVU043

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

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0 references

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