(Q39050290)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

0 references

0 references

single cell transcriptomics

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

7

Barbara J Wold

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

author name string

Georgi K Marinov

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Brian A Williams

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Ken McCue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Gary P Schroth

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Richard M Myers

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

publication date

3 December 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

2 March 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44618

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

volume

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

page(s)

496-510

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

2 March 2020

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

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9 September 2017

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9 September 2017

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Differential analysis of gene regulation at transcript resolution with RNA-seq

9 September 2017

1 reference

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9 September 2017

1 reference

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9 September 2017

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9 September 2017

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9 September 2017

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Transcriptional burst frequency and burst size are equally modulated across the human genome

9 September 2017

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9 September 2017

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9 September 2017

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Landscape of transcription in human cells

9 September 2017

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9 September 2017

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CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

9 September 2017

1 reference

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Single-neuron RNA-Seq: technical feasibility and reproducibility

9 September 2017

1 reference

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A simple and novel method for RNA-seq library preparation of single cell cDNA analysis by hyperactive Tn5 transposase

9 September 2017

1 reference

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Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

9 September 2017

1 reference

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Single-cell systems biology by super-resolution imaging and combinatorial labeling

9 September 2017

1 reference

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Microfluidic single-cell real-time PCR for comparative analysis of gene expression patterns

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Alternative splicing of RNA triplets is often regulated and accelerates proteome evolution

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Transposase mediated construction of RNA-seq libraries.

9 September 2017

1 reference

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AlleleSeq: analysis of allele-specific expression and binding in a network framework

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

High-throughput microfluidic single-cell RT-qPCR

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

9 September 2017

1 reference

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Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

9 September 2017

1 reference

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A user's guide to the encyclopedia of DNA elements (ENCODE)

9 September 2017

1 reference

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Development and applications of single-cell transcriptome analysis

9 September 2017

1 reference

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Differential expression analysis for sequence count data

9 September 2017

1 reference

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A window into third-generation sequencing

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

9 September 2017

1 reference

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Regulatory divergence in Drosophila revealed by mRNA-seq.

9 September 2017

1 reference

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

9 September 2017

1 reference

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RNA-Seq analysis to capture the transcriptome landscape of a single cell

9 September 2017

1 reference

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Digital transcriptome profiling from attomole-level RNA samples

9 September 2017

1 reference

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An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Next generation software for functional trend analysis

9 September 2017

1 reference

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Stochastic noise in splicing machinery

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Global analysis of allele-specific expression in Arabidopsis thaliana

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

mRNA-Seq whole-transcriptome analysis of a single cell

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

TopHat: discovering splice junctions with RNA-Seq

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

A census of human transcription factors: function, expression and evolution

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

WGCNA: an R package for weighted correlation network analysis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Single-RNA counting reveals alternative modes of gene expression in yeast

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Alternative isoform regulation in human tissue transcriptomes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Nature, nurture, or chance: stochastic gene expression and its consequences

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

The potential and challenges of nanopore sequencing

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Imaging individual mRNA molecules using multiple singly labeled probes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Mapping and quantifying mammalian transcriptomes by RNA-Seq

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Stochastic gene expression: from single molecules to the proteome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

A general framework for weighted gene co-expression network analysis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Noise in gene expression: origins, consequences, and control

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Java Treeview--extensible visualization of microarray data

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Open source clustering software

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

How prevalent is functional alternative splicing in the human genome?

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Noise in eukaryotic gene expression

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Stochastic gene expression in a single cell

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Regulation of noise in the expression of a single gene

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Visualization of single RNA transcripts in situ

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Widespread monoallelic expression on human autosomes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Single-cell analysis of regulatory gene expression in quiescent and activated mouse skeletal muscle satellite cells

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941114

Mechanisms and consequences of widespread random monoallelic expression

17 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24299736

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.161034.113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24299736%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference