(Q39097397)

9 September 2017

Standard atomic volumes in double-stranded DNA and packing in protein--DNA interfaces (English)

1 reference

9 September 2017

5

S J Wodak

1 reference

9 September 2017

4

J Janin

1 reference

9 September 2017

K Nadassy

1

1 reference

9 September 2017

I Tomás-Oliveira

series ordinal

2

1 reference

9 September 2017

I Alberts

series ordinal

3

1 reference

9 September 2017

language of work or name

English

0 references

publication date

1 August 2001

1 reference

9 September 2017

Nucleic Acids Research

1 reference

9 September 2017

29

1 reference

9 September 2017

16

1 reference

9 September 2017

3362-3376

1 reference

Protein packing: dependence on protein size, secondary structure and amino acid composition.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Wet and dry interfaces: the role of solvent in protein-protein and protein-DNA recognition

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

The packing density in proteins: standard radii and volumes.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

The atomic structure of protein-protein recognition sites

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Protein stability: still an unsolved problem

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Deviations from standard atomic volumes as a quality measure for protein crystal structures

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Packing at the protein-water interface

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Principles of protein-protein interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Shape complementarity at protein/protein interfaces

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

The interpretation of protein structures: Total volume, group volume distributions and packing density

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Solid model compounds and the thermodynamics of protein unfolding

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Principles of protein-protein recognition

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Areas, volumes, packing and protein structure

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Protein-DNA interactions: A structural analysis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Structural features of protein-nucleic acid recognition sites

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Atomic size packing defects in proteins

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Probing the stability of a partly folded apomyoglobin intermediate by site-directed mutagenesis

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Volume changes on protein folding.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=55857

Calculation of protein volumes: an alternative to the Voronoi procedure

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11504874

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Volume occupation, environment and accessibility in proteins. The problem of the protein surface

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11504874

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence for a molten globule state as a general intermediate in protein folding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11504874

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/29.16.3362

1 reference

9 September 2017

1 reference

9 September 2017

PubMed publication ID

11504874

1 reference