(Q39205310)

10 September 2017

title

High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations (English)

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10 September 2017

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Haruki Nakamura

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10 September 2017

Hiroki Shirai

1

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10 September 2017

Kazuyoshi Ikeda

2

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10 September 2017

Kazuo Yamashita

3

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10 September 2017

Yuko Tsuchiya

4

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10 September 2017

Jamica Sarmiento

5

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10 September 2017

Shide Liang

6

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10 September 2017

Tatsuaki Morokata

7

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10 September 2017

Kenji Mizuguchi

8

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10 September 2017

Junichi Higo

9

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10 September 2017

Daron M Standley

10

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10 September 2017

language of work or name

English

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publication date

13 May 2014

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10 September 2017

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10 September 2017

volume

82

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10 September 2017

issue

8

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10 September 2017

page(s)

1624-1635

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Antibody modeling assessment

10 September 2017

cites work

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https://api.crossref.org/works/10.1002%2FPROT.24591

Conformations of immunoglobulin hypervariable regions

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

H3-rules: identification of CDR-H3 structures in antibodies

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

Structural classification of CDR-H3 revisited: a lesson in antibody modeling

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Protein loop selection using orientation-dependent force fields derived by parameter optimization.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

Protein Loop Modeling with Optimized Backbone Potential Functions.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

MolProbity: all-atom structure validation for macromolecular crystallography

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

Stability improvement of antibodies for extracellular and intracellular applications: CDR grafting to stable frameworks and structure-based framework engineering

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

A database of immunoglobulins with integrated tools: DIGIT

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

A new clustering of antibody CDR loop conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Conformational sampling of CDR-H3 in antibodies by multicanonical molecular dynamics simulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Ab initio simulation of a 57-residue protein in explicit solvent reproduces the native conformation in the lowest free-energy cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Enhanced and effective conformational sampling of protein molecular systems for their free energy landscapes

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

Medicinal chemistry and the molecular operating environment (MOE): application of QSAR and molecular docking to drug discovery

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

LEAP: highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Fast and accurate prediction of protein side-chain conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Modeling antibody hypervariable loops: a combined algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24591

Second antibody modeling assessment (AMA-II).

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24591

21 January 2018

Identifiers

DOI

10.1002/PROT.24591

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release_j4ctvngkdzdgxd3wybbofmsbni

10 September 2017

Fatcat ID

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