(Q39273323)

English

Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution (English)

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

author name string

Baker A

1

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Julienne H

2

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Chen CL

3

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Audit B

4

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

d'Aubenton-Carafa Y

5

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Thermes C

6

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Arneodo A

7

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

publication date

26 September 2012

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

European Physical Journal E

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

35

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

92

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Making sense of eukaryotic DNA replication origins

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

DNA replication in eukaryotic cells

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Epigenomic replication: linking epigenetics to DNA replication

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Replication in context: dynamic regulation of DNA replication patterns in metazoans

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Replication fork movement sets chromatin loop size and origin choice in mammalian cells

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

A revisionist replicon model for higher eukaryotic genomes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Eukaryotic DNA replication origins: many choices for appropriate answers

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Evaluating genome-scale approaches to eukaryotic DNA replication

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Strand compositional asymmetry in bacterial and large viral genomes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Replication-associated mutational asymmetry in the human genome

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Human gene organization driven by the coordination of replication and transcription.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Transcription-coupled TA and GC strand asymmetries in the human genome.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Separation of B. subtilis DNA into complementary strands. 3. Direct analysis

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Properties of a general model of DNA evolution under no-strand-bias conditions.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Evolution of DNA base composition under no-strand-bias conditions when the substitution rates are not constant.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Strand asymmetries in DNA evolution

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Transcription-associated mutational asymmetry in mammalian evolution

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Transcription induces strand-specific mutations at the 5' end of human genes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Transcription-induced mutational strand bias and its effect on substitution rates in human genes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Asymmetries generated by transcription-coupled repair in enterobacterial genes.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Mechanisms of transcription-coupled DNA repair

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Similar compositional biases are caused by very different mutational effects.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Long-range bidirectional strand asymmetries originate at CpG islands in the human genome

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Dividing the workload at a eukaryotic replication fork

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Strand-specific compositional asymmetries in double-stranded DNA viruses.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome?

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

DNA replication induces compositional biases in yeast

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Evolutionary Rate at the Molecular Level

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

The impact of recombination on nucleotide substitutions in the human genome

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Biased gene conversion and the evolution of mammalian genomic landscapes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

The antisense transcriptomes of human cells

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

RNA exosome depletion reveals transcription upstream of active human promoters

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Divergent transcription from active promoters

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

The relationship between DNA replication and human genome organization

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Human mutation rate associated with DNA replication timing

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Conservation of neutral substitution rate and substitutional asymmetries in mammalian genes

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Genomic signatures of germline gene expression

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Dependence of mutational asymmetry on gene-expression levels in the human genome

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Evolution of synonymous codon usage in metazoans

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

The UCSC Genome Browser Database

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

DNA methylation landscapes: provocative insights from epigenomics

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Wide variations in neighbor-dependent substitution rates.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Identification and measurement of neighbor-dependent nucleotide substitution processes.

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

Universal replication biases in bacteria

1 reference

https://api.crossref.org/works/10.1140%2FEPJE%2FI2012-12092-Y

21 January 2018

The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bifractality of human DNA strand-asymmetry profiles results from transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA replication origins: from sequence specificity to epigenetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

From DNA sequence analysis to modeling replication in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of replication of Mycoplasma genitalium

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA replication timing data corroborate in silico human replication origin predictions

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deamination as the basis of strand-asymmetric evolution in transcribed Escherichia coli sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between transcription and C to T mutations in the non-transcribed DNA strand.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low frequency rhythms in human DNA sequences: a key to the organization of gene location and orientation?

1 reference

https://pubmed.ncbi.nlm.nih.gov/23001787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1140/EPJE/I2012-12092-Y

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

Dimensions Publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

10 September 2017

ResearchGate publication ID

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