(Q39323801)

11 September 2017

title

Improving the accuracy of protein stability predictions with multistate design using a variety of backbone ensembles (English)

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11 September 2017

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James A Davey

1

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11 September 2017

Roberto A Chica

series ordinal

2

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11 September 2017

language of work or name

English

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publication date

22 November 2013

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11 September 2017

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11 September 2017

volume

82

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11 September 2017

issue

5

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11 September 2017

page(s)

771-784

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Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design

11 September 2017

cites work

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https://api.crossref.org/works/10.1002%2FPROT.24457

Potential energy functions for protein design.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Enzyme-like proteins by computational design

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Exploring the origins of binding specificity through the computational redesign of calmodulin

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Computational design of receptors for an organophosphate surrogate of the nerve agent soman

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Computational redesign of endonuclease DNA binding and cleavage specificity

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Full-sequence computational design and solution structure of a thermostable protein variant

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Kemp elimination catalysts by computational enzyme design

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Protein design using continuous rotamers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Predicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Increasing Sequence Diversity with Flexible Backbone Protein Design: The Complete Redesign of a Protein Hydrophobic Core

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Flexible backbone sampling methods to model and design protein alternative conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Multistate approaches in computational protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

The backrub motion: how protein backbone shrugs when a sidechain dances

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

RosettaBackrub--a web server for flexible backbone protein structure modeling and design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Protonate3D: assignment of ionization states and hydrogen coordinates to macromolecular structures

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Dramatic performance enhancements for the FASTER optimization algorithm

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Bayesian statistical analysis of protein side-chain rotamer preferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Probing the role of packing specificity in protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Effective energy function for proteins in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Pairwise calculation of protein solvent-accessible surface areas

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Iterative approach to computational enzyme design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

The effect of numerical error on the reproducibility of molecular geometry optimizations

21 January 2018

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https://api.crossref.org/works/10.1002%2FPROT.24457

Designing ensembles in conformational and sequence space to characterize and engineer proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Role of conformational sampling in computing mutation-induced changes in protein structure and stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Eris: an automated estimator of protein stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Modeling backbone flexibility improves protein stability estimation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

X-ray vs. NMR structures as templates for computational protein design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

Thoroughly sampling sequence space: large-scale protein design of structural ensembles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

A survey of truncated-Newton methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24457

21 January 2018

Identifiers

DOI

10.1002/PROT.24457

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11 September 2017

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